C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 6550
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000187574 RP23-251N10.2-001 ENSMUSG00000099617 10090 - 1:145164951-145165943 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000187574
Transcript ID Testis
ENSMUST00000187574 0.065±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001MQ CIL_0001MQ_0002 CGP 1:144752683-146902472

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000227157 LDHA-003 protein_coding Homo_sapiens 0 599
ENST00000375710 LDHA-023 retained_intron Homo_sapiens 0 544
ENST00000379412 LDHA-005 protein_coding Homo_sapiens 0 787
ENST00000394996 LDHAP5-001 processed_pseudogene Homo_sapiens 0 388
ENST00000396222 LDHA-002 protein_coding Homo_sapiens 0 573
ENST00000397561 LDHAP4-001 processed_pseudogene Homo_sapiens 0 680
ENST00000398295 LDHAP7-001 processed_pseudogene Homo_sapiens 0 490
ENST00000422447 LDHA-001 protein_coding Homo_sapiens 0 787
ENST00000430553 LDHA-010 protein_coding Homo_sapiens 0 252
ENST00000460405 LDHA-008 retained_intron Homo_sapiens 0 455
ENST00000469976 LDHA-006 retained_intron Homo_sapiens 3e-26 122
ENST00000478970 LDHA-009 protein_coding Homo_sapiens 0 388
ENST00000486690 LDHA-017 nonsense_mediated_decay Homo_sapiens 0 403
ENST00000494573 LDHA-007 retained_intron Homo_sapiens 0 252
ENST00000495052 LDHA-004 protein_coding Homo_sapiens 0 335
ENST00000535451 LDHA-014 protein_coding Homo_sapiens 0 224
ENST00000536528 LDHA-021 nonsense_mediated_decay Homo_sapiens 2e-26 122
ENST00000537296 LDHA-022 retained_intron Homo_sapiens 0 588
ENST00000539814 LDHA-016 nonsense_mediated_decay Homo_sapiens 0 252
ENST00000540430 LDHA-201 protein_coding Homo_sapiens 0 787
ENST00000541097 LDHA-019 nonsense_mediated_decay Homo_sapiens 0 255
ENST00000542179 LDHA-020 protein_coding Homo_sapiens 0 787
ENST00000543445 LDHA-013 protein_coding Homo_sapiens 0 449
ENST00000543695 LDHA-015 nonsense_mediated_decay Homo_sapiens 0 252
ENST00000545215 LDHA-011 nonsense_mediated_decay Homo_sapiens 0 544
ENST00000545467 LDHA-018 nonsense_mediated_decay Homo_sapiens 3e-26 122

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