C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000551956 KRT4-001 ENSG00000170477 9606 - 12:52806549-52814551 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartKidneyLungOvaryPlacentaENST00000551956
Transcript ID Adrenal Breast Heart Kidney Lung Ovary Placenta
ENST00000551956 0.008±0.00 0.051±0.00 0.021±0.00 0.339±0.00 0.609±0.41 70.967±90.42 0.096±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033Q CIL_00033Q_000L CGP 12:52789685-52814551
CIL_00033Q CIL_00033Q_000C CGP 12:52806549-52834295

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005882 NAS:IEA intermediate filament
GO:0007010 IMP cytoskeleton organization
GO:0009986 IDA cell surface
GO:0030855 ISS epithelial cell differentiation
GO:0045095 IDA keratin filament
GO:0045111 IDA intermediate filament cytoskeleton
GO:0050680 ISS negative regulation of epithelial cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023797 Krt4-201 protein_coding Mus_musculus 0 1251
ENSMUST00000063292 Krt73-001 protein_coding Mus_musculus 0 603
ENSMUST00000023788 Krt6a-201 protein_coding Mus_musculus 0 579
ENSMUST00000023786 Krt6b-201 protein_coding Mus_musculus 0 545
ENSMUST00000023709 Krt5-001 protein_coding Mus_musculus 0 540
ENSMUST00000071104 Krt72-001 protein_coding Mus_musculus 0 518
ENSMUST00000088018 Krt74-201 protein_coding Mus_musculus 0 401
ENSMUST00000100184 Gm5478-201 protein_coding Mus_musculus 0 302
ENSMUST00000023790 Krt1-201 protein_coding Mus_musculus 0 300
ENSMUST00000127671 Krt72-002 processed_transcript Mus_musculus 4.00001e-40 171

Loading