C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023790 Krt1-201 ENSMUSG00000046834 10090 - 15:101845428-101850786 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023790
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023790 0.026±0.01 0.269±0.09 0.548±0.19 2.591±1.51 2.043±1.76 0.161±0.10 0.022±0.01 0.024±0.01 0.036±0.04 0.147±0.03 1.231±0.12 0.480±0.35 0.313±0.32 0.024±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033Q CIL_00033Q_0012 CGP 15:101810689-101850786
CIL_00033Q CIL_00033Q_000T CGP 15:101845428-101869705

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001867 IEA complement activation, lectin pathway
GO:0001895 IEA retina homeostasis
GO:0005198 IEA structural molecule activity
GO:0005515 IEA protein binding
GO:0005615 IEA extracellular space
GO:0005634 IEA nucleus
GO:0005886 IEA plasma membrane
GO:0016020 IEA membrane
GO:0030246 IEA carbohydrate binding
GO:0031012 IDA extracellular matrix
GO:0045095 IDA keratin filament
GO:0050728 IGI negative regulation of inflammatory response
GO:0061436 IMP establishment of skin barrier
GO:0070062 IEA extracellular vesicular exosome
GO:0072562 IEA blood microparticle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000252242 KRT5-001 protein_coding Homo_sapiens 0 353
ENST00000252250 KRT6C-001 protein_coding Homo_sapiens 0 399
ENST00000252252 KRT6B-001 protein_coding Homo_sapiens 0 399
ENST00000330722 KRT6A-001 protein_coding Homo_sapiens 0 394
ENST00000331817 KRT7-001 protein_coding Homo_sapiens 7e-22 110
ENST00000332411 KRT76-001 protein_coding Homo_sapiens 0 348
ENST00000409686 KRT8P11-001 processed_pseudogene Homo_sapiens 7e-21 106
ENST00000413425 KRT8P18-001 processed_pseudogene Homo_sapiens 0.000000000000009 86
ENST00000463294 KRT8P13-001 processed_pseudogene Homo_sapiens 1e-17 95
ENST00000534154 KRT8P26-001 processed_pseudogene Homo_sapiens 0.000000000000008 86
ENST00000547613 KRT7-005 processed_transcript Homo_sapiens 0.00000000000005 82
ENST00000549420 KRT5-005 protein_coding Homo_sapiens 0 204
ENST00000549898 KRT6A-002 retained_intron Homo_sapiens 5.60519e-45 185
ENST00000551916 KRT8P19-001 processed_pseudogene Homo_sapiens 1e-18 99
ENST00000551956 KRT4-001 protein_coding Homo_sapiens 0 300
ENST00000552629 KRT5-002 retained_intron Homo_sapiens 0 355
ENST00000552668 KRT4-003 nonsense_mediated_decay Homo_sapiens 2e-18 97
ENST00000557533 KRT8P1-001 processed_pseudogene Homo_sapiens 6e-16 90
ENST00000560090 KRT8P23-001 processed_pseudogene Homo_sapiens 0.00000000000003 84
ENST00000604727 KRT8P47-001 processed_pseudogene Homo_sapiens 0.00000000007 73

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