C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 6A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023788 Krt6a-201 ENSMUSG00000058354 10090 - 15:101689932-101694307 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonLiverLungMuscleOvaryPlacentaTestisENSMUST00000023788
Transcript ID Bladder Brain Breast Colon Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023788 0.017±0.00 0.146±0.03 1.238±0.89 0.045±0.02 0.006±0.00 2.596±0.23 0.110±0.03 0.100±0.06 1.826±2.54 1.238±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033Q CIL_00033Q_000R CGP 15:101676034-101694307
CIL_00033Q CIL_00033Q_000Y CGP 15:101689932-101712891

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002009 IGI morphogenesis of an epithelium
GO:0005198 IEA structural molecule activity
GO:0016055 IDA Wnt signaling pathway
GO:0031424 IGI keratinization
GO:0045095 IEA keratin filament
GO:0045109 IGI intermediate filament organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000028270 gfap-001 protein_coding Danio_rerio 7e-23 113
ENST00000224237 VIM-001 protein_coding Homo_sapiens 0.000000000002 79
ENST00000252242 KRT5-001 protein_coding Homo_sapiens 0 1168
ENST00000252250 KRT6C-001 protein_coding Homo_sapiens 0 1783
ENST00000252252 KRT6B-001 protein_coding Homo_sapiens 0 1762
ENST00000257951 KRT84-001 protein_coding Homo_sapiens 0 350
ENST00000267119 KRT71-001 protein_coding Homo_sapiens 0 544
ENST00000293308 KRT8-002 protein_coding Homo_sapiens 0 448
ENST00000293745 KRT72-201 protein_coding Homo_sapiens 0 566
ENST00000304620 KRT78-001 protein_coding Homo_sapiens 0 298
ENST00000305748 KRT73-001 protein_coding Homo_sapiens 0 525
ENST00000330553 KRT79-001 protein_coding Homo_sapiens 0 604
ENST00000330722 KRT6A-001 protein_coding Homo_sapiens 0 1796
ENST00000331817 KRT7-001 protein_coding Homo_sapiens 0 588
ENST00000332411 KRT76-001 protein_coding Homo_sapiens 0 652
ENST00000354310 KRT72-002 protein_coding Homo_sapiens 0 364
ENST00000359499 KRT78-002 protein_coding Homo_sapiens 0 217
ENST00000396270 KRT8P39-001 processed_pseudogene Homo_sapiens 0 244
ENST00000409686 KRT8P11-001 processed_pseudogene Homo_sapiens 0 364
ENST00000413425 KRT8P18-001 processed_pseudogene Homo_sapiens 0 235
ENST00000414328 KRT8P45-001 processed_pseudogene Homo_sapiens 0 327
ENST00000417996 KRT3-001 protein_coding Homo_sapiens 0 665
ENST00000423953 KRT8P20-001 processed_pseudogene Homo_sapiens 0 193
ENST00000425226 KRT8P15-001 processed_pseudogene Homo_sapiens 0 261
ENST00000430398 KRT8P21-001 processed_pseudogene Homo_sapiens 4e-38 163
ENST00000441609 KRT8P44-001 processed_pseudogene Homo_sapiens 4.99983e-42 176
ENST00000463294 KRT8P13-001 processed_pseudogene Homo_sapiens 0 333
ENST00000468527 KRT8P12-002 processed_transcript Homo_sapiens 4e-22 110
ENST00000469543 VIM-003 nonsense_mediated_decay Homo_sapiens 0.0000000000008 81
ENST00000472924 KRT8P12-001 transcribed_processed_pseudogene Homo_sapiens 2e-40 171
ENST00000473150 KRT8P25-001 processed_pseudogene Homo_sapiens 0 298
ENST00000487938 VIM-002 nonsense_mediated_decay Homo_sapiens 0.000000000002 79
ENST00000489121 KRT8P36-001 processed_pseudogene Homo_sapiens 0 298
ENST00000508125 KRT8P33-001 processed_pseudogene Homo_sapiens 0 361
ENST00000512037 KRT8P46-001 processed_pseudogene Homo_sapiens 0 291
ENST00000512863 KRT8P32-001 processed_pseudogene Homo_sapiens 0 331
ENST00000519669 KRT8P3-001 processed_pseudogene Homo_sapiens 0 418
ENST00000533003 KRT8P7-001 processed_pseudogene Homo_sapiens 0 309
ENST00000534154 KRT8P26-001 processed_pseudogene Homo_sapiens 8e-30 135
ENST00000537672 KRT72-001 protein_coding Homo_sapiens 0 566
ENST00000544301 VIM-201 protein_coding Homo_sapiens 0.000000000002 79
ENST00000546542 KRT8-015 protein_coding Homo_sapiens 0.000000000003 77
ENST00000546583 KRT8-005 retained_intron Homo_sapiens 5e-40 171
ENST00000546826 KRT8-013 protein_coding Homo_sapiens 0 285
ENST00000546897 KRT8-003 protein_coding Homo_sapiens 0 448
ENST00000546934 KRT73-002 retained_intron Homo_sapiens 0 370
ENST00000547110 KRT78-003 protein_coding Homo_sapiens 4e-30 135
ENST00000547183 KRT127P-001 unprocessed_pseudogene Homo_sapiens 3e-20 102
ENST00000547413 KRT8-016 protein_coding Homo_sapiens 9.99995e-41 171
ENST00000547613 KRT7-005 processed_transcript Homo_sapiens 2e-33 147
ENST00000547890 KRT5-010 retained_intron Homo_sapiens 0 300
ENST00000548409 KRT5-008 protein_coding Homo_sapiens 0 545
ENST00000548735 KRT6A-005 retained_intron Homo_sapiens 0 283
ENST00000548998 KRT8-014 protein_coding Homo_sapiens 0 217
ENST00000549420 KRT5-005 protein_coding Homo_sapiens 0 568
ENST00000549511 KRT5-009 retained_intron Homo_sapiens 0 542
ENST00000549600 KRT6A-004 retained_intron Homo_sapiens 0 399
ENST00000549754 KRT6A-003 retained_intron Homo_sapiens 0 525
ENST00000549898 KRT6A-002 retained_intron Homo_sapiens 0 544
ENST00000550170 KRT8-008 retained_intron Homo_sapiens 9.80909e-45 185
ENST00000551013 KRT5-006 retained_intron Homo_sapiens 0 322
ENST00000551188 KRT5-007 protein_coding Homo_sapiens 0 318
ENST00000551916 KRT8P19-001 processed_pseudogene Homo_sapiens 0 263
ENST00000551956 KRT4-001 protein_coding Homo_sapiens 0 579
ENST00000552150 KRT8-004 protein_coding Homo_sapiens 0 448
ENST00000552551 KRT8-001 protein_coding Homo_sapiens 0 448
ENST00000552629 KRT5-002 retained_intron Homo_sapiens 0 1133
ENST00000552668 KRT4-003 nonsense_mediated_decay Homo_sapiens 9e-26 121
ENST00000553087 KRT6C-002 retained_intron Homo_sapiens 0 416
ENST00000557533 KRT8P1-001 processed_pseudogene Homo_sapiens 0 228
ENST00000558927 KRT8P9-001 processed_pseudogene Homo_sapiens 0 259
ENST00000560090 KRT8P23-001 processed_pseudogene Homo_sapiens 0 320
ENST00000562022 KRT8P50-001 processed_pseudogene Homo_sapiens 0 274
ENST00000604727 KRT8P47-001 processed_pseudogene Homo_sapiens 0 283
ENST00000622375 TTBK2-201 protein_coding Homo_sapiens 8.99998e-41 174

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