C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 5478
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000100184 Gm5478-201 ENSMUSG00000095241 10090 - 15:101643024-101647380 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainKidneyLungENSMUST00000100184
Transcript ID Bladder Brain Kidney Lung
ENSMUST00000100184 0.023±0.02 0.006±0.00 0.012±0.00 0.015±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0045095 IEA keratin filament

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000252242 KRT5-001 protein_coding Homo_sapiens 0 617
ENST00000252250 KRT6C-001 protein_coding Homo_sapiens 0 859
ENST00000252252 KRT6B-001 protein_coding Homo_sapiens 0 859
ENST00000257951 KRT84-001 protein_coding Homo_sapiens 2e-32 145
ENST00000293308 KRT8-002 protein_coding Homo_sapiens 0 202
ENST00000304620 KRT78-001 protein_coding Homo_sapiens 9.80909e-45 185
ENST00000330553 KRT79-001 protein_coding Homo_sapiens 0 270
ENST00000330722 KRT6A-001 protein_coding Homo_sapiens 0 870
ENST00000331817 KRT7-001 protein_coding Homo_sapiens 0 239
ENST00000332411 KRT76-001 protein_coding Homo_sapiens 0 307
ENST00000359499 KRT78-002 protein_coding Homo_sapiens 0.000000000000005 88
ENST00000396270 KRT8P39-001 processed_pseudogene Homo_sapiens 7e-36 156
ENST00000399259 KRT8P6-001 processed_pseudogene Homo_sapiens 1e-22 111
ENST00000409686 KRT8P11-001 processed_pseudogene Homo_sapiens 2e-40 171
ENST00000413425 KRT8P18-001 processed_pseudogene Homo_sapiens 3e-29 134
ENST00000414328 KRT8P45-001 processed_pseudogene Homo_sapiens 3e-39 167
ENST00000417996 KRT3-001 protein_coding Homo_sapiens 0 298
ENST00000430398 KRT8P21-001 processed_pseudogene Homo_sapiens 2e-22 111
ENST00000441609 KRT8P44-001 processed_pseudogene Homo_sapiens 2e-30 137
ENST00000463294 KRT8P13-001 processed_pseudogene Homo_sapiens 2e-35 154
ENST00000468527 KRT8P12-002 processed_transcript Homo_sapiens 3e-18 97
ENST00000472924 KRT8P12-001 transcribed_processed_pseudogene Homo_sapiens 4e-33 147
ENST00000473150 KRT8P25-001 processed_pseudogene Homo_sapiens 1e-37 161
ENST00000489121 KRT8P36-001 processed_pseudogene Homo_sapiens 1e-33 148
ENST00000508125 KRT8P33-001 processed_pseudogene Homo_sapiens 1e-37 161
ENST00000512037 KRT8P46-001 processed_pseudogene Homo_sapiens 1e-33 148
ENST00000512863 KRT8P32-001 processed_pseudogene Homo_sapiens 9e-35 152
ENST00000519669 KRT8P3-001 processed_pseudogene Homo_sapiens 3.9937e-43 180
ENST00000533003 KRT8P7-001 processed_pseudogene Homo_sapiens 3e-34 150
ENST00000534154 KRT8P26-001 processed_pseudogene Homo_sapiens 6e-31 139
ENST00000546542 KRT8-015 protein_coding Homo_sapiens 0.000000002 68
ENST00000546583 KRT8-005 retained_intron Homo_sapiens 3e-37 161
ENST00000546826 KRT8-013 protein_coding Homo_sapiens 0 202
ENST00000546897 KRT8-003 protein_coding Homo_sapiens 0 202
ENST00000547110 KRT78-003 protein_coding Homo_sapiens 4e-30 135
ENST00000547413 KRT8-016 protein_coding Homo_sapiens 7e-38 161
ENST00000547613 KRT7-005 processed_transcript Homo_sapiens 5e-29 132
ENST00000548998 KRT8-014 protein_coding Homo_sapiens 9e-38 161
ENST00000549420 KRT5-005 protein_coding Homo_sapiens 0 440
ENST00000549600 KRT6A-004 retained_intron Homo_sapiens 0.000000004 66
ENST00000549754 KRT6A-003 retained_intron Homo_sapiens 0 364
ENST00000549898 KRT6A-002 retained_intron Homo_sapiens 0 422
ENST00000550170 KRT8-008 retained_intron Homo_sapiens 2e-37 161
ENST00000551436 KRT4-005 retained_intron Homo_sapiens 2e-17 94
ENST00000551916 KRT8P19-001 processed_pseudogene Homo_sapiens 9e-30 135
ENST00000551956 KRT4-001 protein_coding Homo_sapiens 0 302
ENST00000552150 KRT8-004 protein_coding Homo_sapiens 0 202
ENST00000552551 KRT8-001 protein_coding Homo_sapiens 0 202
ENST00000552629 KRT5-002 retained_intron Homo_sapiens 0 617
ENST00000552668 KRT4-003 nonsense_mediated_decay Homo_sapiens 4e-24 115
ENST00000557533 KRT8P1-001 processed_pseudogene Homo_sapiens 1e-28 132
ENST00000558927 KRT8P9-001 processed_pseudogene Homo_sapiens 1e-33 148
ENST00000560090 KRT8P23-001 processed_pseudogene Homo_sapiens 1e-37 161
ENST00000562022 KRT8P50-001 processed_pseudogene Homo_sapiens 2e-30 137
ENST00000604727 KRT8P47-001 processed_pseudogene Homo_sapiens 2e-30 137
ENST00000622375 TTBK2-201 protein_coding Homo_sapiens 1e-29 137

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