C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000557949 RP11-356M20.1-001 ENSG00000259674 9606 - 15:59406963-59408154 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLiverMuscleOvaryPlacentaTestisENST00000557949
Transcript ID Adrenal Brain Breast Colon Liver Muscle Ovary Placenta Testis
ENST00000557949 0.103±0.00 0.022±0.00 0.108±0.02 0.651±0.16 0.074±0.00 0.018±0.00 0.613±0.82 0.032±0.00 0.063±0.03

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000085365 Gm16477-001 processed_pseudogene Mus_musculus 0 616
ENSMUST00000118791 Rpl7a-ps11-001 processed_pseudogene Mus_musculus 0 599
ENSMUST00000190511 RP23-58N8.1-001 processed_pseudogene Mus_musculus 0 595
ENSMUST00000102898 Rpl7a-001 protein_coding Mus_musculus 0 588
ENSMUST00000090170 Rpl7a-ps3-201 protein_coding Mus_musculus 0 588
ENSMUST00000183380 Gm17828-001 processed_pseudogene Mus_musculus 0 586
ENSMUST00000095218 Rpl7a-ps5-201 protein_coding Mus_musculus 0 571
ENSMUST00000120676 Gm12712-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000094754 Rpl7a-ps8-201 protein_coding Mus_musculus 0 555
ENSMUST00000189720 RP23-321G17.2-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000145247 Gm6286-001 processed_pseudogene Mus_musculus 0 523
ENSMUST00000119745 Gm13864-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000151645 Gm7847-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000120384 Rpl7a-ps12-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000136269 Rpl7a-002 processed_transcript Mus_musculus 0 438
ENSMUST00000137376 Rpl7a-004 processed_transcript Mus_musculus 0 436
ENSMUST00000118615 Gm13183-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000120504 Gm12124-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000143678 Rpl7a-003 processed_transcript Mus_musculus 0 350
ENSMUST00000118838 Gm11362-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000171395 Gm8425-001 processed_pseudogene Mus_musculus 3e-32 143
ENSMUST00000117289 Gm16394-001 processed_pseudogene Mus_musculus 0.0000000005 69

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