C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L7A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102898 Rpl7a-001 ENSMUSG00000062647 10090 + 2:26910764-26913318 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102898
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102898 284.453±92.39 93.604±12.66 564.283±18.12 365.477±216.70 208.301±18.61 355.477±74.48 152.255±26.50 349.630±30.35 570.812±404.52 179.649±8.82 224.342±9.34 484.790±115.00 571.907±285.09 95.421±40.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DH CIL_0006DH_0002 CGP 2:26905262-26913318
CIL_0006DK CIL_0006DK_0002 CGP 2:26910764-26916530

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0016020 IDA membrane
GO:0042254 IEA ribosome biogenesis
GO:0042788 IDA polysomal ribosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315731 RPL7A-005 protein_coding Homo_sapiens 0 207
ENST00000323345 RPL7A-009 protein_coding Homo_sapiens 0 1005
ENST00000393397 AC005042.2-001 processed_pseudogene Homo_sapiens 0 691
ENST00000396414 RP11-242C24.2-001 processed_pseudogene Homo_sapiens 0 645
ENST00000401715 RP3-486D24.1-001 processed_pseudogene Homo_sapiens 0 789
ENST00000417617 AC004129.9-001 processed_pseudogene Homo_sapiens 0 649
ENST00000418052 RPL7AP7-001 processed_pseudogene Homo_sapiens 0 780
ENST00000423357 RPL7AP25-001 processed_pseudogene Homo_sapiens 0 501
ENST00000424041 RPL7AP14-001 processed_pseudogene Homo_sapiens 0 765
ENST00000426573 RP4-738P11.4-001 processed_pseudogene Homo_sapiens 0 501
ENST00000426651 RPL7A-004 protein_coding Homo_sapiens 0 599
ENST00000427056 RPL7AP7-001 processed_pseudogene Homo_sapiens 0 797
ENST00000428027 RP11-534L20.4-001 processed_pseudogene Homo_sapiens 0 795
ENST00000429766 AC073900.4-001 processed_pseudogene Homo_sapiens 0 564
ENST00000430506 RPL7AP7-001 processed_pseudogene Homo_sapiens 0 791
ENST00000430732 RPL7AP7-001 processed_pseudogene Homo_sapiens 0 780
ENST00000434317 RP11-577H5.1-001 processed_pseudogene Homo_sapiens 0 708
ENST00000437448 RPL7AP7-001 processed_pseudogene Homo_sapiens 0 780
ENST00000441433 RPL7AP38-001 processed_pseudogene Homo_sapiens 0 656
ENST00000445592 RPL7AP7-001 processed_pseudogene Homo_sapiens 0 791
ENST00000449688 RP4-738P11.3-001 processed_pseudogene Homo_sapiens 0 422
ENST00000451600 RPL7AP7-001 processed_pseudogene Homo_sapiens 0 780
ENST00000452821 RP11-170M17.2-001 processed_pseudogene Homo_sapiens 0 815
ENST00000453064 RP11-467H10.1-001 processed_pseudogene Homo_sapiens 0 702
ENST00000453429 RPL7AP7-001 processed_pseudogene Homo_sapiens 0 780
ENST00000463740 RPL7A-001 processed_transcript Homo_sapiens 0 619
ENST00000468019 RPL7A-003 processed_transcript Homo_sapiens 0 972
ENST00000469026 RPL7AP60-001 processed_pseudogene Homo_sapiens 0 824
ENST00000473054 RP11-204K16.1-001 processed_pseudogene Homo_sapiens 0 732
ENST00000473913 RP11-463O9.1-001 processed_pseudogene Homo_sapiens 0 791
ENST00000476420 RPL7AP56-001 processed_pseudogene Homo_sapiens 0 398
ENST00000477943 RPL7AP6-001 processed_pseudogene Homo_sapiens 0 931
ENST00000482859 RPL7AP30-001 processed_pseudogene Homo_sapiens 0 876
ENST00000483820 RPL7AP4-001 processed_pseudogene Homo_sapiens 0 628
ENST00000485706 RPL7A-006 processed_transcript Homo_sapiens 0 503
ENST00000486157 RP11-342F17.2-001 processed_pseudogene Homo_sapiens 0 680
ENST00000486538 RPL7AP11-001 processed_pseudogene Homo_sapiens 0 846
ENST00000488538 RPL7AP26-001 processed_pseudogene Homo_sapiens 0 726
ENST00000496515 RPL7AP2-001 processed_pseudogene Homo_sapiens 0 549
ENST00000496554 RPL7A-002 processed_transcript Homo_sapiens 0 691
ENST00000496790 FAM185A-005 processed_transcript Homo_sapiens 0 250
ENST00000497325 CTD-2270N23.1-001 processed_pseudogene Homo_sapiens 0 859
ENST00000541658 RPL7AP3-001 processed_pseudogene Homo_sapiens 0 468
ENST00000557949 RP11-356M20.1-001 processed_pseudogene Homo_sapiens 0 588
ENST00000588490 RPL7AP66-001 processed_pseudogene Homo_sapiens 0 931

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