C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 16477
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000085365 Gm16477-001 ENSMUSG00000062758 10090 - 7:131614188-131614988 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000085365
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000085365 0.136±0.06 0.124±0.04 0.237±0.04 0.944±1.18 0.382±0.27 0.093±0.02 0.059±0.02 0.174±0.09 0.100±0.05 0.073±0.03 0.069±0.00 0.234±0.10 0.110±0.03 2.744±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WI CIL_0002WI_0002 CGP 7:129591863-133123350
CIL_0001BE CIL_0001BE_0002 CGP 7:130162451-133123350
CIL_0008DB CIL_0008DB_0002 VISTA 7:131163946-131765852
CIL_0009A3 CIL_0009A3_0002 VISTA 7:131196657-131797909
CIL_0007QE CIL_0007QE_0002 VISTA 7:131249727-131851322
CIL_00099C CIL_00099C_0002 VISTA 7:131412593-132013659
CIL_0007LX CIL_0007LX_0002 UCNEbase 7:131465048-131797301
CIL_0008SI CIL_0008SI_0002 VISTA 7:131477679-132078766
CIL_00011U CIL_00011U_0002 CGP 7:131560391-131994405

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315731 RPL7A-005 protein_coding Homo_sapiens 0 219
ENST00000323345 RPL7A-009 protein_coding Homo_sapiens 0 976
ENST00000393397 AC005042.2-001 processed_pseudogene Homo_sapiens 0 702
ENST00000396414 RP11-242C24.2-001 processed_pseudogene Homo_sapiens 0 664
ENST00000401715 RP3-486D24.1-001 processed_pseudogene Homo_sapiens 0 798
ENST00000417617 AC004129.9-001 processed_pseudogene Homo_sapiens 0 651
ENST00000418052 RPL7AP7-001 processed_pseudogene Homo_sapiens 0 797
ENST00000423357 RPL7AP25-001 processed_pseudogene Homo_sapiens 0 518
ENST00000424041 RPL7AP14-001 processed_pseudogene Homo_sapiens 0 787
ENST00000426573 RP4-738P11.4-001 processed_pseudogene Homo_sapiens 0 518
ENST00000426651 RPL7A-004 protein_coding Homo_sapiens 0 610
ENST00000427056 RPL7AP7-001 processed_pseudogene Homo_sapiens 0 813
ENST00000428027 RP11-534L20.4-001 processed_pseudogene Homo_sapiens 0 811
ENST00000429766 AC073900.4-001 processed_pseudogene Homo_sapiens 0 592
ENST00000430506 RPL7AP7-001 processed_pseudogene Homo_sapiens 0 808
ENST00000430732 RPL7AP7-001 processed_pseudogene Homo_sapiens 0 797
ENST00000434317 RP11-577H5.1-001 processed_pseudogene Homo_sapiens 0 736
ENST00000437448 RPL7AP7-001 processed_pseudogene Homo_sapiens 0 797
ENST00000441433 RPL7AP38-001 processed_pseudogene Homo_sapiens 0 673
ENST00000445592 RPL7AP7-001 processed_pseudogene Homo_sapiens 0 808
ENST00000449688 RP4-738P11.3-001 processed_pseudogene Homo_sapiens 0 433
ENST00000451600 RPL7AP7-001 processed_pseudogene Homo_sapiens 0 797
ENST00000452821 RP11-170M17.2-001 processed_pseudogene Homo_sapiens 0 826
ENST00000453064 RP11-467H10.1-001 processed_pseudogene Homo_sapiens 0 730
ENST00000453429 RPL7AP7-001 processed_pseudogene Homo_sapiens 0 797
ENST00000463740 RPL7A-001 processed_transcript Homo_sapiens 0 616
ENST00000468019 RPL7A-003 processed_transcript Homo_sapiens 0 972
ENST00000469026 RPL7AP60-001 processed_pseudogene Homo_sapiens 0 841
ENST00000473054 RP11-204K16.1-001 processed_pseudogene Homo_sapiens 0 760
ENST00000473913 RP11-463O9.1-001 processed_pseudogene Homo_sapiens 0 808
ENST00000476420 RPL7AP56-001 processed_pseudogene Homo_sapiens 0 420
ENST00000477943 RPL7AP6-001 processed_pseudogene Homo_sapiens 0 942
ENST00000482859 RPL7AP30-001 processed_pseudogene Homo_sapiens 0 893
ENST00000483820 RPL7AP4-001 processed_pseudogene Homo_sapiens 0 651
ENST00000485706 RPL7A-006 processed_transcript Homo_sapiens 0 520
ENST00000486157 RP11-342F17.2-001 processed_pseudogene Homo_sapiens 0 691
ENST00000486538 RPL7AP11-001 processed_pseudogene Homo_sapiens 0 857
ENST00000488538 RPL7AP26-001 processed_pseudogene Homo_sapiens 0 743
ENST00000496515 RPL7AP2-001 processed_pseudogene Homo_sapiens 0 555
ENST00000496554 RPL7A-002 processed_transcript Homo_sapiens 0 702
ENST00000496790 FAM185A-005 processed_transcript Homo_sapiens 0 254
ENST00000497325 CTD-2270N23.1-001 processed_pseudogene Homo_sapiens 0 876
ENST00000541658 RPL7AP3-001 processed_pseudogene Homo_sapiens 0 484
ENST00000557949 RP11-356M20.1-001 processed_pseudogene Homo_sapiens 0 616
ENST00000588490 RPL7AP66-001 processed_pseudogene Homo_sapiens 0 942

Loading