C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1 pseudogene 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000558213 HNRNPA1P5-001 ENSG00000259512 9606 + 15:67627852-67629135 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000558213
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000558213 0.028±0.00 0.100±0.00 0.309±0.00 0.074±0.00 0.014±0.00 0.089±0.08 0.045±0.02 0.082±0.00 0.165±0.00 0.013±0.00 0.378±0.02 0.081±0.00 0.158±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L5 CIL_0007L5_0001 UCNEbase 15:66906943-67787880
CIL_0008V3 CIL_0008V3_0001 VISTA 15:67072826-67673347
CIL_0008DX CIL_0008DX_0001 VISTA 15:67486945-68088375
CIL_00098T CIL_00098T_0001 VISTA 15:67539824-68142788
CIL_0008FO CIL_0008FO_0001 VISTA 15:67583922-68185582

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 1171
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 1170
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 1114
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 1077
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 1074
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 1066
ENSMUST00000119097 Gm13418-001 processed_pseudogene Mus_musculus 0 898
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 682
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 291
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 283

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