C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000577640 UBB-008 ENSG00000170315 9606 + 17:16380931-16382526 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENST00000577640
Transcript ID Placenta
ENST00000577640 144.307±20.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00058V CIL_00058V_0002 CGP 17:16342534-16382745

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000136938 Ubb-002 protein_coding Mus_musculus 0 911
ENSMUST00000019649 Ubb-001 protein_coding Mus_musculus 0 911
ENSMUST00000111388 Gm1821-001 processed_pseudogene Mus_musculus 0 894
ENSMUST00000156249 Ubc-002 protein_coding Mus_musculus 0 800
ENSMUST00000136312 Ubc-001 protein_coding Mus_musculus 0 800
ENSMUST00000108707 Ubc-003 protein_coding Mus_musculus 0 765
ENSDART00000099105 ubc-001 protein_coding Danio_rerio 0 612
ENSMUST00000122457 Gm8648-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000150739 Rps27a-005 processed_transcript Mus_musculus 2e-23 113
ENSMUST00000143418 Rps27a-001 processed_transcript Mus_musculus 0.0000000005 69

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