C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136312 Ubc-001 ENSMUSG00000008348 10090 - 5:125385965-125390014 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000136312
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000136312 162.720±31.89 118.166±17.17 113.659±8.84 143.674±126.94 82.700±21.38 154.576±18.71 95.671±11.02 184.313±10.54 121.208±61.77 110.915±12.30 111.384±37.13 144.000±51.53 72.327±28.76 75.856±38.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00006N CIL_00006N_0003 CGP 5:125277087-125390202

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005739 ISO mitochondrion
GO:0005829 TAS cytosol
GO:0007141 IMP male meiosis I
GO:0007144 IMP female meiosis I
GO:0008584 IMP male gonad development
GO:0008585 IMP female gonad development
GO:0010992 IMP:IGI ubiquitin homeostasis
GO:0021888 IMP hypothalamus gonadotrophin-releasing hormone neuron development
GO:0043005 ISO neuron projection
GO:0043025 ISO neuronal cell body
GO:0047497 ISO mitochondrion transport along microtubule
GO:0048812 ISO neuron projection morphogenesis
GO:0051881 ISO regulation of mitochondrial membrane potential
GO:0060612 IMP adipose tissue development
GO:0060613 IMP fat pad development
GO:0061136 ISO regulation of proteasomal protein catabolic process
GO:0072520 IMP seminiferous tubule development
GO:0097009 IMP energy homeostasis
GO:1901214 ISO regulation of neuron death
GO:1902255 ISO positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000099105 ubc-001 protein_coding Danio_rerio 0 1779
ENSDART00000060745 uba52-001 protein_coding Danio_rerio 0 243
ENST00000302182 UBB-001 protein_coding Homo_sapiens 0 881
ENST00000339647 UBC-001 protein_coding Homo_sapiens 0 2658
ENST00000392399 UBBP1-001 processed_pseudogene Homo_sapiens 0 470
ENST00000395837 UBB-002 protein_coding Homo_sapiens 0 881
ENST00000395839 UBB-003 protein_coding Homo_sapiens 0 881
ENST00000399822 UBA52P6-001 processed_pseudogene Homo_sapiens 0 254
ENST00000430157 UBA52-002 protein_coding Homo_sapiens 0 292
ENST00000442744 UBA52-001 protein_coding Homo_sapiens 0 292
ENST00000486088 UBA52P7-001 processed_pseudogene Homo_sapiens 0 248
ENST00000498379 UBA52P8-001 processed_pseudogene Homo_sapiens 0 217
ENST00000535131 UBC-015 protein_coding Homo_sapiens 0 608
ENST00000535788 UBB-005 protein_coding Homo_sapiens 0 588
ENST00000535859 UBC-013 protein_coding Homo_sapiens 0 497
ENST00000536769 UBC-007 protein_coding Homo_sapiens 0 2656
ENST00000538617 UBC-003 protein_coding Homo_sapiens 0 1197
ENST00000540351 UBC-009 protein_coding Homo_sapiens 0 660
ENST00000540700 UBC-011 protein_coding Homo_sapiens 0 544
ENST00000541272 UBC-016 protein_coding Homo_sapiens 0 660
ENST00000541645 UBC-014 protein_coding Homo_sapiens 0 634
ENST00000544481 UBC-017 processed_transcript Homo_sapiens 0 571
ENST00000546120 UBC-201 protein_coding Homo_sapiens 0 898
ENST00000546271 UBC-012 protein_coding Homo_sapiens 0 558
ENST00000546846 RP3-432I18.1-001 processed_pseudogene Homo_sapiens 0 189
ENST00000577640 UBB-008 protein_coding Homo_sapiens 0 800
ENST00000578649 UBB-009 processed_transcript Homo_sapiens 0 313
ENST00000578706 UBB-007 protein_coding Homo_sapiens 0 359
ENST00000578713 UBBP4-004 protein_coding Homo_sapiens 0 782
ENST00000583708 UBBP4-003 protein_coding Homo_sapiens 0 802
ENST00000584398 UBBP4-006 protein_coding Homo_sapiens 0 329
ENST00000584755 UBBP4-001 protein_coding Homo_sapiens 0 1051
ENST00000594527 UBA52-013 protein_coding Homo_sapiens 1.00053e-42 176
ENST00000595158 UBA52-009 protein_coding Homo_sapiens 0 292
ENST00000595683 UBA52-004 protein_coding Homo_sapiens 0 292
ENST00000596272 UBA52-012 protein_coding Homo_sapiens 0 215
ENST00000596273 UBA52-003 protein_coding Homo_sapiens 0 292
ENST00000596304 UBA52-005 protein_coding Homo_sapiens 0 292
ENST00000597451 UBA52-011 protein_coding Homo_sapiens 0 292
ENST00000598780 UBA52-008 protein_coding Homo_sapiens 0 292
ENST00000598814 UBA52-007 retained_intron Homo_sapiens 4e-34 148
ENST00000599256 UBA52-006 protein_coding Homo_sapiens 0 252
ENST00000599551 UBA52-010 protein_coding Homo_sapiens 0 292
ENST00000599595 UBA52-014 protein_coding Homo_sapiens 0 292
ENST00000614404 UBB-201 protein_coding Homo_sapiens 0 881

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