C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136938 Ubb-002 ENSMUSG00000019505 10090 + 11:62551676-62552853 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000136938
Transcript ID Testis
ENSMUST00000136938 212.319±97.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00058V CIL_00058V_0003 CGP 11:62524946-62553213

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005739 ISO mitochondrion
GO:0007141 IMP male meiosis I
GO:0007144 IMP female meiosis I
GO:0008584 IMP male gonad development
GO:0008585 IMP female gonad development
GO:0010992 IMP:IGI ubiquitin homeostasis
GO:0021888 IMP hypothalamus gonadotrophin-releasing hormone neuron development
GO:0043005 ISO neuron projection
GO:0043025 ISO neuronal cell body
GO:0047497 ISO mitochondrion transport along microtubule
GO:0048812 ISO neuron projection morphogenesis
GO:0051881 ISO regulation of mitochondrial membrane potential
GO:0060612 IMP adipose tissue development
GO:0060613 IMP fat pad development
GO:0061136 ISO regulation of proteasomal protein catabolic process
GO:0072520 IMP seminiferous tubule development
GO:0097009 IMP energy homeostasis
GO:1901214 ISO regulation of neuron death
GO:1902255 ISO positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302182 UBB-001 protein_coding Homo_sapiens 0 996
ENST00000339647 UBC-001 protein_coding Homo_sapiens 0 881
ENST00000376781 UBBP2-001 processed_pseudogene Homo_sapiens 0 270
ENST00000392399 UBBP1-001 processed_pseudogene Homo_sapiens 0 531
ENST00000395837 UBB-002 protein_coding Homo_sapiens 0 996
ENST00000395839 UBB-003 protein_coding Homo_sapiens 0 1062
ENST00000445497 UBBP3-001 processed_pseudogene Homo_sapiens 0 272
ENST00000535788 UBB-005 protein_coding Homo_sapiens 0 675
ENST00000536769 UBC-007 protein_coding Homo_sapiens 0 881
ENST00000538617 UBC-003 protein_coding Homo_sapiens 0 878
ENST00000541272 UBC-016 protein_coding Homo_sapiens 0 627
ENST00000546120 UBC-201 protein_coding Homo_sapiens 0 837
ENST00000577640 UBB-008 protein_coding Homo_sapiens 0 911
ENST00000578649 UBB-009 processed_transcript Homo_sapiens 0 351
ENST00000578706 UBB-007 protein_coding Homo_sapiens 0 418
ENST00000578713 UBBP4-004 protein_coding Homo_sapiens 0 878
ENST00000581769 UBBP4-002 protein_coding Homo_sapiens 0 372
ENST00000583708 UBBP4-003 protein_coding Homo_sapiens 0 922
ENST00000584398 UBBP4-006 protein_coding Homo_sapiens 0 388
ENST00000584755 UBBP4-001 protein_coding Homo_sapiens 0 935
ENST00000614404 UBB-201 protein_coding Homo_sapiens 0 994

Loading