C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108707 Ubc-003 ENSMUSG00000008348 10090 - 5:125387659-125389186 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000108707
Transcript ID Testis
ENSMUST00000108707 60.434±17.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00006N CIL_00006N_0003 CGP 5:125277087-125390202

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0010992 IGI ubiquitin homeostasis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000099105 ubc-001 protein_coding Danio_rerio 0 684
ENSDART00000060745 uba52-001 protein_coding Danio_rerio 0 243
ENST00000302182 UBB-001 protein_coding Homo_sapiens 0 765
ENST00000339647 UBC-001 protein_coding Homo_sapiens 0 793
ENST00000392399 UBBP1-001 processed_pseudogene Homo_sapiens 0 451
ENST00000395837 UBB-002 protein_coding Homo_sapiens 0 765
ENST00000395839 UBB-003 protein_coding Homo_sapiens 0 765
ENST00000399822 UBA52P6-001 processed_pseudogene Homo_sapiens 0 248
ENST00000430157 UBA52-002 protein_coding Homo_sapiens 0 283
ENST00000442744 UBA52-001 protein_coding Homo_sapiens 0 283
ENST00000486088 UBA52P7-001 processed_pseudogene Homo_sapiens 0 248
ENST00000498379 UBA52P8-001 processed_pseudogene Homo_sapiens 0 211
ENST00000535131 UBC-015 protein_coding Homo_sapiens 0 597
ENST00000535788 UBB-005 protein_coding Homo_sapiens 0 580
ENST00000535859 UBC-013 protein_coding Homo_sapiens 0 497
ENST00000536769 UBC-007 protein_coding Homo_sapiens 0 793
ENST00000538617 UBC-003 protein_coding Homo_sapiens 0 793
ENST00000540351 UBC-009 protein_coding Homo_sapiens 0 652
ENST00000540700 UBC-011 protein_coding Homo_sapiens 0 532
ENST00000541272 UBC-016 protein_coding Homo_sapiens 0 652
ENST00000541645 UBC-014 protein_coding Homo_sapiens 0 628
ENST00000544481 UBC-017 processed_transcript Homo_sapiens 0 560
ENST00000546120 UBC-201 protein_coding Homo_sapiens 0 793
ENST00000546271 UBC-012 protein_coding Homo_sapiens 0 547
ENST00000546846 RP3-432I18.1-001 processed_pseudogene Homo_sapiens 0 189
ENST00000577640 UBB-008 protein_coding Homo_sapiens 0 765
ENST00000578649 UBB-009 processed_transcript Homo_sapiens 0 311
ENST00000578706 UBB-007 protein_coding Homo_sapiens 0 359
ENST00000578713 UBBP4-004 protein_coding Homo_sapiens 0 676
ENST00000583708 UBBP4-003 protein_coding Homo_sapiens 0 697
ENST00000584398 UBBP4-006 protein_coding Homo_sapiens 0 329
ENST00000584755 UBBP4-001 protein_coding Homo_sapiens 0 713
ENST00000594527 UBA52-013 protein_coding Homo_sapiens 1.00053e-42 176
ENST00000595158 UBA52-009 protein_coding Homo_sapiens 0 283
ENST00000595683 UBA52-004 protein_coding Homo_sapiens 0 283
ENST00000596272 UBA52-012 protein_coding Homo_sapiens 0 215
ENST00000596273 UBA52-003 protein_coding Homo_sapiens 0 283
ENST00000596304 UBA52-005 protein_coding Homo_sapiens 0 283
ENST00000597451 UBA52-011 protein_coding Homo_sapiens 0 283
ENST00000598780 UBA52-008 protein_coding Homo_sapiens 0 283
ENST00000598814 UBA52-007 retained_intron Homo_sapiens 4e-29 132
ENST00000599256 UBA52-006 protein_coding Homo_sapiens 0 235
ENST00000599551 UBA52-010 protein_coding Homo_sapiens 0 283
ENST00000599595 UBA52-014 protein_coding Homo_sapiens 0 283
ENST00000614404 UBB-201 protein_coding Homo_sapiens 0 765

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