C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear factor I/X
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000076715 Nfix-003 ENSMUSG00000001911 10090 - 8:84708614-84800140 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonLiverMuscleOvaryTestisENSMUST00000076715
Transcript ID Adipose Breast Colon Liver Muscle Ovary Testis
ENSMUST00000076715 18.773±0.00 5.255±0.00 5.932±1.12 5.672±0.88 34.936±7.87 12.524±2.01 0.513±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZV CIL_0007ZV_0002 VISTA 8:84428902-85032705
CIL_0007VV CIL_0007VV_0002 VISTA 8:84441926-85045230
CIL_0004F9 CIL_0004F9_0002 CGP 8:84699876-84800344

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006260 IEA DNA replication
GO:0006351 IEA transcription, DNA-templated
GO:0021549 IMP cerebellum development
GO:0021680 IMP cerebellar Purkinje cell layer development
GO:0021707 IMP cerebellar granule cell differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048708 IMP astrocyte differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000090235 nfixb-202 protein_coding Danio_rerio 0 741
ENSDART00000139001 nfixb-001 protein_coding Danio_rerio 0 736
ENSDART00000044670 nfixb-201 protein_coding Danio_rerio 0 710
ENSDART00000121795 nfixa-201 protein_coding Danio_rerio 0 652
ENSDART00000135861 nfixa-001 protein_coding Danio_rerio 0 531
ENST00000341919 NFIC-004 protein_coding Homo_sapiens 0 595
ENST00000358552 NFIX-201 protein_coding Homo_sapiens 0 1921
ENST00000360105 NFIX-003 protein_coding Homo_sapiens 0 1921
ENST00000395111 NFIC-003 protein_coding Homo_sapiens 0 560
ENST00000397661 NFIX-001 protein_coding Homo_sapiens 0 1628
ENST00000443272 NFIC-006 protein_coding Homo_sapiens 0 595
ENST00000585382 NFIX-009 nonsense_mediated_decay Homo_sapiens 0 575
ENST00000585575 NFIX-006 protein_coding Homo_sapiens 0 1441
ENST00000586797 NFIX-005 nonsense_mediated_decay Homo_sapiens 0 1439
ENST00000586873 NFIX-011 protein_coding Homo_sapiens 0 795
ENST00000586919 NFIC-011 protein_coding Homo_sapiens 0 560
ENST00000587260 NFIX-007 protein_coding Homo_sapiens 0 1445
ENST00000587760 NFIX-002 protein_coding Homo_sapiens 0 1441
ENST00000588228 NFIX-004 protein_coding Homo_sapiens 0 1439
ENST00000588680 NFIX-012 processed_transcript Homo_sapiens 0 390
ENST00000589123 NFIC-001 protein_coding Homo_sapiens 0 560
ENST00000590027 NFIX-008 protein_coding Homo_sapiens 0 819
ENST00000590282 NFIC-005 protein_coding Homo_sapiens 0 595
ENST00000591028 NFIX-010 protein_coding Homo_sapiens 0 767
ENST00000592199 NFIX-013 protein_coding Homo_sapiens 0 1489

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