C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000588843 RP11-49K24.5-001 ENSG00000267800 9606 + 18:47137018-47137290 processed_pseudogene

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DZ CIL_0008DZ_0001 VISTA 18:46943900-47544913
CIL_0000B0 CIL_0000B0_0002 CGP 18:47107403-47176281

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117664 Gm10241-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000117715 Gm11971-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000153892 Sumo2-001 protein_coding Mus_musculus 0 348
ENSMUST00000121569 Smt3h2-ps4-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000117589 Sumo2-004 protein_coding Mus_musculus 0 339
ENSMUST00000118989 Gm13690-001 processed_pseudogene Mus_musculus 0 337
ENSMUST00000021084 Sumo2-002 nonsense_mediated_decay Mus_musculus 0 333
ENSMUST00000119738 Gm12335-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000121366 Gm13430-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000121185 Sumo2-003 protein_coding Mus_musculus 0 331
ENSMUST00000122297 Gm12755-001 unprocessed_pseudogene Mus_musculus 0 305
ENSMUST00000121084 Smt3h2-ps-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000140844 Sumo2-006 retained_intron Mus_musculus 0 287
ENSMUST00000120751 Gm11556-001 processed_pseudogene Mus_musculus 0 265
ENSMUST00000050672 Sumo2-005 retained_intron Mus_musculus 0 207
ENSMUST00000117132 Gm9836-001 processed_pseudogene Mus_musculus 0 206
ENSMUST00000118155 Sumo2-007 protein_coding Mus_musculus 0 206

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