C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type I, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000090979 scn1a-202 ENSDARG00000010783 7955 + 9:50902616-50972365 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000090979
Transcript ID Brain Heart Kidney Muscle
ENSDART00000090979 0.028±0.02 0.030±0.00 0.098±0.00 0.006±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005216 IEA ion channel activity
GO:0005248 IEA voltage-gated sodium channel activity
GO:0005515 IEA protein binding
GO:0006811 IEA ion transport
GO:0006814 IEA sodium ion transport
GO:0016020 IEA membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021056 Scn4a-001 protein_coding Mus_musculus 0 830
ENSMUST00000065196 Scn5a-201 protein_coding Mus_musculus 0 292
ENSMUST00000066432 Scn3a-201 protein_coding Mus_musculus 0 381
ENSMUST00000070617 Scn11a-201 protein_coding Mus_musculus 0 198
ENSMUST00000077489 Scn1a-004 protein_coding Mus_musculus 0 381
ENSMUST00000082209 Scn8a-201 protein_coding Mus_musculus 0 351
ENSMUST00000084787 Scn10a-201 protein_coding Mus_musculus 0 307
ENSMUST00000094951 Scn1a-005 protein_coding Mus_musculus 0 381
ENSMUST00000100063 Scn9a-201 protein_coding Mus_musculus 0 340
ENSMUST00000100064 Scn9a-001 protein_coding Mus_musculus 0 340
ENSMUST00000100069 Scn3a-001 protein_coding Mus_musculus 0 381
ENSMUST00000108908 Scn8a-203 protein_coding Mus_musculus 0 351
ENSMUST00000108909 Scn8a-204 protein_coding Mus_musculus 0 351
ENSMUST00000108910 Scn8a-205 protein_coding Mus_musculus 0 351
ENSMUST00000112354 Scn9a-002 protein_coding Mus_musculus 0 340
ENSMUST00000112366 Scn1a-001 protein_coding Mus_musculus 0 381
ENSMUST00000112371 Scn1a-201 protein_coding Mus_musculus 0 381
ENSMUST00000117911 Scn5a-001 protein_coding Mus_musculus 0 292
ENSMUST00000120420 Scn5a-002 protein_coding Mus_musculus 0 292
ENSMUST00000155838 Scn3a-003 processed_transcript Mus_musculus 0 342
ENSMUST00000164384 Scn9a-202 protein_coding Mus_musculus 0 340
ENSMUST00000169900 Scn9a-203 protein_coding Mus_musculus 0 340
ENST00000333535 SCN5A-014 protein_coding Homo_sapiens 0 265
ENST00000413689 SCN5A-001 protein_coding Homo_sapiens 0 265
ENST00000414099 SCN5A-004 protein_coding Homo_sapiens 0 265
ENST00000423572 SCN5A-003 protein_coding Homo_sapiens 0 265
ENST00000425664 SCN5A-201 protein_coding Homo_sapiens 0 265
ENST00000435607 SCN4A-201 protein_coding Homo_sapiens 0 933
ENST00000443581 SCN5A-202 protein_coding Homo_sapiens 0 265
ENST00000449557 SCN5A-010 protein_coding Homo_sapiens 0 265
ENST00000450102 SCN5A-008 protein_coding Homo_sapiens 0 265
ENST00000451551 SCN5A-203 protein_coding Homo_sapiens 0 265
ENST00000455624 SCN5A-002 protein_coding Homo_sapiens 0 265
ENST00000578147 SCN4A-001 protein_coding Homo_sapiens 0 922

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