C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L27a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000530585 RPL27A-003 ENSG00000166441 9606 + 11:8682788-8684489 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q2 CIL_0008Q2_0001 VISTA 11:8432154-9033661
CIL_00049H CIL_00049H_0001 CGP 11:8612037-8714759
CIL_00049E CIL_00049E_0001 CGP 11:8682411-8910951

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000149143 Rpl27a-004 retained_intron Mus_musculus 0 204
ENSMUST00000143107 Rpl27a-001 protein_coding Mus_musculus 0 195
ENSMUST00000077389 Gm7536-201 protein_coding Mus_musculus 0 193
ENSMUST00000084017 Gm5908-201 processed_pseudogene Mus_musculus 0 193
ENSMUST00000080866 Gm5453-201 processed_pseudogene Mus_musculus 0 193
ENSMUST00000156921 Rpl27a-003 nonsense_mediated_decay Mus_musculus 0 189
ENSMUST00000170338 RP23-323H18.3-001 processed_pseudogene Mus_musculus 1.4013e-45 187
ENSMUST00000117531 Gm14044-001 processed_pseudogene Mus_musculus 4.06377e-44 182
ENSMUST00000075382 Rpl27a-ps1-201 processed_pseudogene Mus_musculus 9.99995e-41 171
ENSMUST00000184561 Gm19353-001 processed_pseudogene Mus_musculus 4e-39 165
ENSMUST00000132877 Rpl27a-002 retained_intron Mus_musculus 2e-37 159
ENSMUST00000121260 Gm14407-001 processed_pseudogene Mus_musculus 1e-30 137
ENSMUST00000117666 Gm12218-001 processed_pseudogene Mus_musculus 5e-29 132
ENSMUST00000122320 Gm14439-001 processed_pseudogene Mus_musculus 5e-29 132
ENSMUST00000174303 Rpl27a-006 retained_intron Mus_musculus 6e-28 128
ENSMUST00000053298 Rpl27a-005 retained_intron Mus_musculus 2e-23 113

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