C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L27a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000532359 RPL27A-006 ENSG00000166441 9606 + 11:8682792-8685848 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000532359
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000532359 313.261±0.00 523.937±0.00 57.403±0.00 95.547±39.42 198.215±53.85 337.012±210.83 121.665±83.47 230.820±115.77 228.254±44.23 500.706±428.95 200.739±161.25 749.805±724.22 850.814±441.49 177.814±118.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q2 CIL_0008Q2_0001 VISTA 11:8432154-9033661
CIL_00049H CIL_00049H_0001 CGP 11:8612037-8714759
CIL_00049E CIL_00049E_0001 CGP 11:8682411-8910951

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053298 Rpl27a-005 retained_intron Mus_musculus 0 287
ENSMUST00000143107 Rpl27a-001 protein_coding Mus_musculus 0 287
ENSMUST00000077389 Gm7536-201 protein_coding Mus_musculus 0 272
ENSMUST00000117531 Gm14044-001 processed_pseudogene Mus_musculus 0 263
ENSMUST00000084017 Gm5908-201 processed_pseudogene Mus_musculus 0 263
ENSMUST00000118191 Gm8213-001 processed_pseudogene Mus_musculus 0 257
ENSMUST00000122416 Gm15727-001 processed_pseudogene Mus_musculus 0 257
ENSMUST00000170338 RP23-323H18.3-001 processed_pseudogene Mus_musculus 0 257
ENSMUST00000121260 Gm14407-001 processed_pseudogene Mus_musculus 0 252
ENSMUST00000122320 Gm14439-001 processed_pseudogene Mus_musculus 0 250
ENSMUST00000119886 Gm13038-001 processed_pseudogene Mus_musculus 0 198
ENSMUST00000117666 Gm12218-001 processed_pseudogene Mus_musculus 0 198
ENSMUST00000080866 Gm5453-201 processed_pseudogene Mus_musculus 0 195
ENSMUST00000149143 Rpl27a-004 retained_intron Mus_musculus 0 195
ENSMUST00000156921 Rpl27a-003 nonsense_mediated_decay Mus_musculus 0 191
ENSMUST00000075382 Rpl27a-ps1-201 processed_pseudogene Mus_musculus 1.99993e-41 172
ENSMUST00000184561 Gm19353-001 processed_pseudogene Mus_musculus 8.99999e-40 167
ENSMUST00000174303 Rpl27a-006 retained_intron Mus_musculus 4e-28 128
ENSMUST00000132877 Rpl27a-002 retained_intron Mus_musculus 1e-23 113

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