C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 8412
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000077493 Gm8412-001 ENSMUSG00000092617 10090 + 19:27858058-27858497 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainHeartLiverLungOvaryPlacentaTestisENSMUST00000077493
Transcript ID Adipose Adrenal Bladder Brain Heart Liver Lung Ovary Placenta Testis
ENSMUST00000077493 0.135±0.02 0.230±0.00 0.028±0.00 0.292±0.12 0.120±0.00 0.036±0.00 0.195±0.07 0.601±0.35 0.041±0.01 0.333±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000NH CIL_0000NH_0002 CGP 19:27388702-28011166
CIL_0009AI CIL_0009AI_0002 VISTA 19:27604248-28205597
CIL_0000F0 CIL_0000F0_0002 CGP 19:27761721-28680077

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294189 RPL29-001 protein_coding Homo_sapiens 0 348
ENST00000413677 RP4-595K12.1-001 processed_pseudogene Homo_sapiens 0 305
ENST00000425197 RPL29P19-001 processed_pseudogene Homo_sapiens 0 259
ENST00000431445 AC087650.1-001 processed_pseudogene Homo_sapiens 0 279
ENST00000440227 RPL29P7-001 processed_pseudogene Homo_sapiens 0 274
ENST00000442089 RP5-1057J7.1-001 processed_pseudogene Homo_sapiens 0 285
ENST00000443998 RP11-632C17__A.1-001 processed_pseudogene Homo_sapiens 0 326
ENST00000446953 RP1-130G2.1-001 processed_pseudogene Homo_sapiens 0 261
ENST00000449887 RP11-166O4.4-001 unprocessed_pseudogene Homo_sapiens 0.0000005 58
ENST00000451924 RP11-42D20.1-001 processed_pseudogene Homo_sapiens 0 298
ENST00000463466 RP11-874G11.1-001 processed_pseudogene Homo_sapiens 0 268
ENST00000465069 RPL29P25-001 processed_pseudogene Homo_sapiens 0 204
ENST00000465434 RPL29P24-001 processed_pseudogene Homo_sapiens 0 283
ENST00000465776 RP11-200A13.2-001 processed_pseudogene Homo_sapiens 0 302
ENST00000466397 RPL29-005 protein_coding Homo_sapiens 0 348
ENST00000470368 RPL29P30-002 processed_transcript Homo_sapiens 0 250
ENST00000475248 RPL29-008 protein_coding Homo_sapiens 0 348
ENST00000478358 RP11-490G8.1-001 processed_pseudogene Homo_sapiens 0 335
ENST00000479017 RPL29-009 protein_coding Homo_sapiens 0 348
ENST00000480306 RPL29-004 nonsense_mediated_decay Homo_sapiens 0 191
ENST00000481629 RPL29-003 protein_coding Homo_sapiens 2e-38 163
ENST00000481681 RPL29P12-001 processed_pseudogene Homo_sapiens 0 329
ENST00000482584 RP11-342F17.1-001 processed_pseudogene Homo_sapiens 0 276
ENST00000484381 RPL29P30-001 transcribed_processed_pseudogene Homo_sapiens 0 250
ENST00000486188 RPL29P23-001 processed_pseudogene Homo_sapiens 0 193
ENST00000486565 RPL29-002 retained_intron Homo_sapiens 2e-18 97
ENST00000486611 RPL29P3-001 processed_pseudogene Homo_sapiens 0 276
ENST00000488409 RPL29P2-001 transcribed_processed_pseudogene Homo_sapiens 0 261
ENST00000492277 RPL29-007 protein_coding Homo_sapiens 0 348
ENST00000494408 RPL29P11-001 processed_pseudogene Homo_sapiens 0 331
ENST00000495383 RPL29-006 protein_coding Homo_sapiens 0 348
ENST00000496042 RP11-452G18.1-001 processed_pseudogene Homo_sapiens 0 196
ENST00000498671 RPL29P2-002 processed_transcript Homo_sapiens 0 261

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