C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 11996
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117538 Gm11996-001 ENSMUSG00000082312 10090 + 11:10239337-10240251 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeENSMUST00000117538
Transcript ID Adipose
ENSMUST00000117538 0.034±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000S3 CIL_0000S3_0002 CGP 11:9191942-11268931

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 669
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 658
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 669
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 669
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 669
ENST00000403475 RP11-378G13.2-001 processed_pseudogene Homo_sapiens 0 518
ENST00000405405 GAPDHP63-001 processed_pseudogene Homo_sapiens 0 553
ENST00000419696 GAPDHP64-001 processed_pseudogene Homo_sapiens 0 516
ENST00000423411 GAPDHP73-001 processed_pseudogene Homo_sapiens 0 442
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 614
ENST00000425504 GAPDHP69-001 processed_pseudogene Homo_sapiens 0 592
ENST00000434621 GAPDHP68-001 processed_pseudogene Homo_sapiens 0 547
ENST00000436626 GAPDHP48-001 processed_pseudogene Homo_sapiens 0 270
ENST00000436818 GAPDHP26-001 processed_pseudogene Homo_sapiens 0 425
ENST00000438477 GAPDHP58-001 processed_pseudogene Homo_sapiens 0 435
ENST00000442317 GAPDHP37-001 processed_pseudogene Homo_sapiens 0 344
ENST00000444107 GAPDHP20-001 processed_pseudogene Homo_sapiens 0 364
ENST00000447061 GAPDHP25-001 processed_pseudogene Homo_sapiens 0 492
ENST00000447427 GAPDHP27-001 processed_pseudogene Homo_sapiens 0 255
ENST00000450301 GAPDHP21-001 processed_pseudogene Homo_sapiens 0 431
ENST00000452570 GAPDHP1-001 processed_pseudogene Homo_sapiens 0 595
ENST00000455134 GAPDHP28-001 processed_pseudogene Homo_sapiens 0 510
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 420
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 658
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 658
ENST00000481866 GAPDHP39-001 processed_pseudogene Homo_sapiens 0 331
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 351
ENST00000507324 GAPDHP61-001 processed_pseudogene Homo_sapiens 0 527
ENST00000512110 AC007016.3-001 processed_pseudogene Homo_sapiens 0 278
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 505
ENST00000513846 GAPDHP60-001 processed_pseudogene Homo_sapiens 0 523
ENST00000513953 RP11-44N17.1-001 processed_pseudogene Homo_sapiens 0 333
ENST00000515281 GAPDHP70-001 processed_pseudogene Homo_sapiens 0 292
ENST00000515313 GAPDHP62-001 processed_pseudogene Homo_sapiens 0 499
ENST00000520713 ANKRD46-009 processed_transcript Homo_sapiens 0 499
ENST00000524319 ANKRD46-003 processed_transcript Homo_sapiens 0 499
ENST00000613707 RP11-343D24.1-001 processed_pseudogene Homo_sapiens 0 294
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 669

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