C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000X3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101204-ENSG00000075043 CGP 9606 20:63343310-63472638
GeneTranscriptPositionBiotype
ENSG00000075043 (KCNQ2)
potassium voltage-gated channel, KQT-like subfamily, member 2 		ENST00000344425 (KCNQ2-006) 63433679-63472638 protein_coding
ENST00000344462 (KCNQ2-012) 63406466-63472509 protein_coding
ENST00000357249 (KCNQ2-001) 63406039-63472638 protein_coding
ENST00000359125 (KCNQ2-003) 63406189-63472638 protein_coding
ENST00000360480 (KCNQ2-011) 63406446-63472638 protein_coding
ENST00000370221 (KCNQ2-009) 63424024-63472638 retained_intron
ENST00000370224 (KCNQ2-007) 63406447-63472638 protein_coding
ENST00000482957 (KCNQ2-010) 63433678-63434730 processed_transcript
ENSG00000101204 (CHRNA4)
cholinergic receptor, nicotinic, alpha 4 (neuronal) 		ENST00000370263 (CHRNA4-001) 63344068-63361387 protein_coding
ENST00000463705 (CHRNA4-002) 63344069-63377993 processed_transcript
ENST00000467563 (CHRNA4-004) 63346594-63361304 processed_transcript
ENST00000475033 (CHRNA4-003) 63370753-63378137 processed_transcript
ENST00000480012 (CHRNA4-006) 63374421-63378401 processed_transcript
ENST00000498043 (CHRNA4-007) 63346594-63359699 nonsense_mediated_decay
ENST00000615287 (CHRNA4-201) 63343310-63361396 protein_coding
ENSG00000203900 (RP11-261N11.8)
 ENST00000370257 (RP11-261N11.8-002) 63359988-63371177 antisense
ENST00000428531 (RP11-261N11.8-001) 63368882-63371172 antisense
ENSG00000226390 (RP11-358D14.2)
 ENST00000436263 (RP11-358D14.2-001) 63448051-63449329 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0000X3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027577-ENSMUSG00000016346 CGP 10090 2:181018380-181135291
GeneTranscriptPositionBiotype
ENSMUSG00000016346 (Kcnq2)
potassium voltage-gated channel, subfamily Q, member 2 		ENSMUST00000016491 (Kcnq2-001) 181075588-181135291 protein_coding
ENSMUST00000049792 (Kcnq2-004) 181075588-181135177 protein_coding
ENSMUST00000081528 (Kcnq2-003) 181075588-181135177 protein_coding
ENSMUST00000103047 (Kcnq2-006) 181075588-181135177 protein_coding
ENSMUST00000103048 (Kcnq2-005) 181075588-181135177 protein_coding
ENSMUST00000103049 (Kcnq2-016) 181080503-181134922 protein_coding
ENSMUST00000103050 (Kcnq2-018) 181081030-181135103 protein_coding
ENSMUST00000103051 (Kcnq2-017) 181079581-181135206 protein_coding
ENSMUST00000123336 (Kcnq2-011) 181108444-181135177 protein_coding
ENSMUST00000129073 (Kcnq2-007) 181085978-181135177 protein_coding
ENSMUST00000129361 (Kcnq2-012) 181108444-181135177 protein_coding
ENSMUST00000129695 (Kcnq2-015) 181080501-181114683 protein_coding
ENSMUST00000139458 (Kcnq2-009) 181096466-181135177 protein_coding
ENSMUST00000140789 (Kcnq2-002) 181108444-181135243 retained_intron
ENSMUST00000144592 (Kcnq2-008) 181096241-181135177 protein_coding
ENSMUST00000145861 (Kcnq2-014) 181084582-181100798 retained_intron
ENSMUST00000149964 (Kcnq2-013) 181075579-181135103 protein_coding
ENSMUST00000152099 (Kcnq2-019) 181086979-181095421 processed_transcript
ENSMUST00000154164 (Kcnq2-010) 181108444-181135177 protein_coding
ENSMUSG00000027577 (Chrna4)
cholinergic receptor, nicotinic, alpha polypeptide 4 		ENSMUST00000067120 (Chrna4-001) 181022311-181039305 protein_coding
ENSMUST00000108851 (Chrna4-002) 181018380-181039187 protein_coding
ENSMUST00000124400 (Chrna4-003) 181034024-181043546 protein_coding
ENSMUST00000135766 (Chrna4-004) 181029425-181039225 nonsense_mediated_decay

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000X3_0001ENSG00000075043ENST00000344425ENST00000344462ENST00000357249ENST00000359125ENST00000360480ENST00000370221ENST00000370224ENST00000482957ENSG00000101204ENST00000370263ENST00000463705ENST00000467563ENST00000475033ENST00000480012ENST00000498043ENST00000615287ENSG00000203900ENST00000370257ENST00000428531ENSG00000226390ENST00000436263CIL_0000X3_0002ENSMUSG00000016346ENSMUST00000016491ENSMUST00000049792ENSMUST00000081528ENSMUST00000103047ENSMUST00000103048ENSMUST00000103049ENSMUST00000103050ENSMUST00000103051ENSMUST00000123336ENSMUST00000129073ENSMUST00000129361ENSMUST00000129695ENSMUST00000139458ENSMUST00000140789ENSMUST00000144592ENSMUST00000145861ENSMUST00000149964ENSMUST00000152099ENSMUST00000154164ENSMUSG00000027577ENSMUST00000067120ENSMUST00000108851ENSMUST00000124400ENSMUST00000135766
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000X3_0001ENSG00000075043ENST00000344425ENST00000344462ENST00000359125ENST00000370221ENST00000370224ENST00000482957ENSG00000101204ENST00000370263ENST00000467563ENST00000498043ENST00000615287ENSG00000203900ENST00000370257ENSG00000226390ENST00000436263CIL_0000X3_0002ENSMUSG00000016346ENSMUST00000016491ENSMUST00000081528ENSMUST00000103048ENSMUST00000103049ENSMUST00000103050ENSMUST00000103051ENSMUST00000123336ENSMUST00000129073ENSMUST00000129361ENSMUST00000129695ENSMUST00000139458ENSMUST00000140789ENSMUST00000144592ENSMUST00000145861ENSMUST00000149964ENSMUST00000152099ENSMUST00000154164ENSMUSG00000027577ENSMUST00000067120ENSMUST00000108851ENSMUST00000135766
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000075043 ENST00000344425 N/A 0.140±0.00 N/A 6.487±0.00 N/A N/A 0.165±0.00 N/A N/A N/A N/A 0.163±0.00 0.069±0.01 24.757±3.08
ENST00000344462 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.158±0.00 N/A N/A
ENST00000357249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000359125 N/A N/A N/A N/A N/A 0.140±0.00 N/A 0.148±0.00 N/A N/A N/A 0.024±0.00 N/A N/A
ENST00000360480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000370221 N/A N/A N/A N/A N/A N/A N/A 0.206±0.00 N/A N/A N/A N/A N/A N/A
ENST00000370224 N/A N/A N/A 1.442±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482957 N/A N/A N/A N/A N/A 0.086±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000101204 ENST00000370263 N/A N/A 0.349±0.00 4.499±0.00 N/A 0.052±0.00 0.038±0.00 0.219±0.10 4.575±0.00 0.081±0.00 N/A 0.024±0.01 0.047±0.00 1.752±0.43
ENST00000463705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467563 N/A 0.017±0.00 0.374±0.00 N/A 0.020±0.00 N/A 0.039±0.00 0.142±0.00 N/A N/A N/A N/A 0.018±0.00 N/A
ENST00000475033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480012 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498043 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.112±0.00 0.548±0.00 N/A 0.018±0.00 N/A
ENST00000615287 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.02 N/A N/A
ENSG00000203900 ENST00000370257 0.024±0.00 0.009±0.00 N/A N/A N/A N/A N/A N/A N/A 0.023±0.01 N/A N/A N/A N/A
ENST00000428531 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226390 ENST00000436263 N/A N/A N/A 0.235±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.760±0.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000016346 ENSMUST00000016491 N/A N/A N/A N/A N/A 0.143±0.00 N/A N/A N/A N/A N/A 0.058±0.03 N/A N/A
ENSMUST00000049792 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000081528 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A N/A
ENSMUST00000103047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000103048 N/A N/A N/A N/A N/A N/A N/A 0.035±0.03 N/A 0.011±0.00 N/A N/A N/A N/A
ENSMUST00000103049 N/A N/A N/A N/A N/A 0.174±0.00 N/A 0.069±0.00 N/A N/A N/A N/A 0.005±0.00 1.918±1.03
ENSMUST00000103050 0.040±0.01 0.620±0.05 N/A N/A 0.027±0.00 N/A N/A 0.030±0.02 N/A 0.016±0.00 N/A 0.061±0.00 N/A 1.251±0.21
ENSMUST00000103051 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.006±0.00 0.025±0.00 N/A N/A N/A
ENSMUST00000123336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.060±0.04 N/A
ENSMUST00000129073 N/A N/A N/A N/A N/A 0.204±0.00 N/A 0.028±0.00 N/A N/A N/A 0.032±0.00 0.039±0.00 N/A
ENSMUST00000129361 N/A N/A N/A N/A N/A N/A N/A 0.028±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000129695 0.014±0.00 N/A 0.015±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.023±0.00 0.082±0.06 1.020±0.81
ENSMUST00000139458 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A N/A N/A
ENSMUST00000140789 0.009±0.00 N/A 0.005±0.00 N/A 0.011±0.00 N/A N/A 0.014±0.00 0.007±0.00 0.016±0.00 N/A 0.028±0.02 0.005±0.00 N/A
ENSMUST00000144592 N/A N/A N/A N/A N/A N/A 0.042±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145861 0.013±0.00 N/A N/A 11.436±0.00 0.014±0.00 N/A N/A 0.015±0.00 0.201±0.00 N/A 0.017±0.00 0.039±0.02 0.010±0.00 0.038±0.00
ENSMUST00000149964 0.012±0.01 0.751±0.00 0.014±0.00 14.776±6.97 0.007±0.00 0.215±0.02 N/A 0.022±0.02 0.009±0.00 0.007±0.00 0.015±0.01 0.013±0.01 0.011±0.01 0.277±0.16
ENSMUST00000152099 0.143±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.106±0.00 0.140±0.00 1.898±0.00
ENSMUST00000154164 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.026±0.00 0.100±0.00 0.048±0.01 N/A
ENSMUSG00000027577 ENSMUST00000067120 0.106±0.02 2.281±0.41 0.014±0.00 7.146±2.15 0.033±0.01 0.036±0.02 0.014±0.00 10.623±3.25 0.686±0.61 0.012±0.00 0.025±0.01 0.900±0.61 0.909±0.65 0.198±0.12
ENSMUST00000108851 N/A 1.634±0.42 0.020±0.00 2.231±0.00 0.032±0.04 0.039±0.02 N/A N/A 0.404±0.20 N/A 0.026±0.01 0.693±0.22 N/A 0.174±0.05
ENSMUST00000124400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135766 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.053±0.00 N/A N/A N/A N/A

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