C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, beta 6 class V
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001513 Tubb6-201 ENSMUSG00000001473 10090 + 18:67390717-67402748 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001513
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001513 51.302±24.25 102.926±5.08 139.964±21.15 5.942±3.93 51.125±20.29 64.191±16.07 20.212±1.09 8.540±1.40 17.416±12.70 26.706±7.55 8.492±0.78 124.147±53.92 45.234±28.46 20.153±16.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZP CIL_0007ZP_0002 VISTA 18:67068230-67671525
CIL_00025T CIL_00025T_0003 CGP 18:67343564-67402748
CIL_0005DV CIL_0005DV_0002 CGP 18:67390717-67449166

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0006184 IEA GTP catabolic process
GO:0007017 IEA microtubule-based process
GO:0051258 IEA protein polymerization
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000122495 tubb6-001 protein_coding Danio_rerio 0 1168
ENSDART00000055380 tubb5-201 protein_coding Danio_rerio 0 1168
ENSDART00000061149 zgc:55461-001 protein_coding Danio_rerio 0 1075
ENSDART00000041279 tubb4b-001 protein_coding Danio_rerio 0 1062
ENSDART00000143702 zgc:123194-001 protein_coding Danio_rerio 0 1057
ENSDART00000019573 zgc:65894-001 protein_coding Danio_rerio 0 1009
ENSDART00000024135 protein_coding Danio_rerio 0 987
ENSDART00000129104 protein_coding Danio_rerio 0 917
ENSDART00000127071 FP102463.1-201 protein_coding Danio_rerio 0 881
ENSDART00000135264 tubb6-002 protein_coding Danio_rerio 0 671
ENSDART00000147110 tubb4b-002 processed_transcript Danio_rerio 0 595
ENSDART00000134744 tubb4b-003 processed_transcript Danio_rerio 0 560
ENST00000248151 TUBBP1-001 transcribed_processed_pseudogene Homo_sapiens 0 1018
ENST00000259818 TUBB2B-001 protein_coding Homo_sapiens 0 1314
ENST00000264071 TUBB4A-001 protein_coding Homo_sapiens 0 1336
ENST00000290377 TUBBP5-002 processed_transcript Homo_sapiens 0 870
ENST00000308911 RP11-683L23.1-201 protein_coding Homo_sapiens 0 878
ENST00000315491 TUBB3-001 protein_coding Homo_sapiens 0 1585
ENST00000317702 TUBB6-001 protein_coding Homo_sapiens 0 1748
ENST00000327892 TUBB-001 protein_coding Homo_sapiens 0 1138
ENST00000330914 TUBB-002 protein_coding Homo_sapiens 0 1072
ENST00000333628 TUBB2A-001 protein_coding Homo_sapiens 0 1358
ENST00000340384 TUBB4B-001 protein_coding Homo_sapiens 0 1230
ENST00000383564 TUBB-001 protein_coding Homo_sapiens 0 1138
ENST00000396384 TUBB-004 protein_coding Homo_sapiens 0 1077
ENST00000396389 TUBB-003 protein_coding Homo_sapiens 0 1070
ENST00000400530 TUBB-004 protein_coding Homo_sapiens 0 1077
ENST00000400531 TUBB-002 protein_coding Homo_sapiens 0 1072
ENST00000400534 TUBB-003 protein_coding Homo_sapiens 0 1070
ENST00000405234 TUBBP9-001 processed_pseudogene Homo_sapiens 0 448
ENST00000405796 TUBB3P1-001 processed_pseudogene Homo_sapiens 0 1051
ENST00000412136 TUBB-003 protein_coding Homo_sapiens 0 1070
ENST00000413547 TUBB-002 protein_coding Homo_sapiens 0 1072
ENST00000415481 TUBB8P11-001 unprocessed_pseudogene Homo_sapiens 0 745
ENST00000416519 TUBBP6-001 processed_pseudogene Homo_sapiens 0 765
ENST00000417736 TUBB6-002 retained_intron Homo_sapiens 0 1637
ENST00000419551 TUBB-003 protein_coding Homo_sapiens 0 1070
ENST00000419792 TUBB-001 protein_coding Homo_sapiens 0 1138
ENST00000420400 TUBB-003 protein_coding Homo_sapiens 0 1070
ENST00000420618 TUBB-004 protein_coding Homo_sapiens 0 1077
ENST00000421473 TUBB-001 protein_coding Homo_sapiens 0 1138
ENST00000422650 TUBB-001 protein_coding Homo_sapiens 0 1138
ENST00000422674 TUBB-001 protein_coding Homo_sapiens 0 1138
ENST00000424734 TUBB-003 protein_coding Homo_sapiens 0 1070
ENST00000425102 TUBB-004 protein_coding Homo_sapiens 0 1077
ENST00000425136 TUBB-003 protein_coding Homo_sapiens 0 1070
ENST00000426754 TUBB-003 protein_coding Homo_sapiens 0 1070
ENST00000427480 TUBB-002 protein_coding Homo_sapiens 0 1072
ENST00000427668 TUBBP10-001 processed_pseudogene Homo_sapiens 0 555
ENST00000428444 TUBB7P-001 unprocessed_pseudogene Homo_sapiens 0 804
ENST00000432462 TUBB-001 protein_coding Homo_sapiens 0 1138
ENST00000435546 TUBB-002 protein_coding Homo_sapiens 0 1072
ENST00000436335 TUBB-002 protein_coding Homo_sapiens 0 1072
ENST00000436628 TUBB-001 protein_coding Homo_sapiens 0 1138
ENST00000437490 TUBB-002 protein_coding Homo_sapiens 0 1072
ENST00000444441 TUBB-004 protein_coding Homo_sapiens 0 1077
ENST00000446385 TUBB-004 protein_coding Homo_sapiens 0 1077
ENST00000447903 TUBB8-201 protein_coding Homo_sapiens 0 804
ENST00000450755 TUBB4AP1-001 processed_pseudogene Homo_sapiens 0 1002
ENST00000453350 TUBB-004 protein_coding Homo_sapiens 0 1077
ENST00000454403 TUBBP2-001 processed_pseudogene Homo_sapiens 0 398
ENST00000454454 TUBB-002 protein_coding Homo_sapiens 0 1072
ENST00000454620 TUBB-004 protein_coding Homo_sapiens 0 1077
ENST00000458717 TUBB8P8-001 unprocessed_pseudogene Homo_sapiens 0 773
ENST00000473006 TUBB2B-002 processed_transcript Homo_sapiens 0 1240
ENST00000478631 SCP2-009 nonsense_mediated_decay Homo_sapiens 0 558
ENST00000489942 TUBB2A-002 processed_transcript Homo_sapiens 0 364
ENST00000503395 TUBBP5-003 processed_transcript Homo_sapiens 0 248
ENST00000508529 TUBBP5-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 865
ENST00000518096 TUBBP1-002 processed_transcript Homo_sapiens 0 1022
ENST00000540257 TUBB4A-201 protein_coding Homo_sapiens 0 1336
ENST00000553656 TUBB3-007 nonsense_mediated_decay Homo_sapiens 0 268
ENST00000554444 TUBB3-002 protein_coding Homo_sapiens 0 1502
ENST00000555609 TUBB3-013 nonsense_mediated_decay Homo_sapiens 0 1410
ENST00000555810 TUBB3-004 protein_coding Homo_sapiens 0 800
ENST00000556536 TUBB3-012 nonsense_mediated_decay Homo_sapiens 0 431
ENST00000556565 TUBB3-003 protein_coding Homo_sapiens 0 278
ENST00000556922 TUBB3-001 protein_coding Homo_sapiens 0 1502
ENST00000557490 TUBB3-014 nonsense_mediated_decay Homo_sapiens 0 385
ENST00000561967 TUBB8-007 protein_coding Homo_sapiens 0 837
ENST00000562809 TUBB8-002 protein_coding Homo_sapiens 0 564
ENST00000563456 TUBB8-003 retained_intron Homo_sapiens 0 372
ENST00000564130 TUBB8-005 protein_coding Homo_sapiens 0 789
ENST00000567466 TUBB8-006 nonsense_mediated_decay Homo_sapiens 0 407
ENST00000568584 TUBB8-001 protein_coding Homo_sapiens 0 922
ENST00000568866 TUBB8-008 protein_coding Homo_sapiens 0 789
ENST00000573909 RP11-683L23.1-002 protein_coding Homo_sapiens 0 778
ENST00000586653 TUBB6-009 protein_coding Homo_sapiens 0 424
ENST00000586810 TUBB6-003 nonsense_mediated_decay Homo_sapiens 0 869
ENST00000587204 TUBB6-011 retained_intron Homo_sapiens 0 424
ENST00000590103 TUBB6-008 protein_coding Homo_sapiens 0 1070
ENST00000590388 TUBB6-010 nonsense_mediated_decay Homo_sapiens 0 424
ENST00000590693 TUBB6-007 protein_coding Homo_sapiens 0 549
ENST00000590967 TUBB6-013 protein_coding Homo_sapiens 0 424
ENST00000591208 TUBB6-005 protein_coding Homo_sapiens 0 1197
ENST00000591463 TUBB6-014 protein_coding Homo_sapiens 0 518
ENST00000591909 TUBB6-006 protein_coding Homo_sapiens 0 424
ENST00000592683 TUBB6-012 protein_coding Homo_sapiens 0 424
ENST00000594555 RP11-683L23.1-005 processed_transcript Homo_sapiens 0 387
ENST00000604929 TUBB4B-002 retained_intron Homo_sapiens 0 1068

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