C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002R8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000018408-ENSG00000114744 CGP 9606 3:149517235-149752499
GeneTranscriptPositionBiotype
ENSG00000018408 (WWTR1)
WW domain containing transcription regulator 1 		ENST00000360632 (WWTR1-004) 149520245-149658101 protein_coding
ENST00000460517 (WWTR1-007) 149657244-149658041 protein_coding
ENST00000465804 (WWTR1-001) 149517235-149703273 protein_coding
ENST00000467467 (WWTR1-003) 149520610-149658025 protein_coding
ENST00000471586 (WWTR1-012) 149520699-149541060 nonsense_mediated_decay
ENST00000472417 (WWTR1-010) 149520841-149576252 protein_coding
ENST00000474080 (WWTR1-002) 149701605-149736714 processed_transcript
ENST00000475579 (WWTR1-006) 149656978-149670909 protein_coding
ENST00000479238 (WWTR1-009) 149572864-149657435 protein_coding
ENST00000485244 (WWTR1-011) 149525805-149542439 retained_intron
ENST00000485352 (WWTR1-008) 149656891-149657767 protein_coding
ENST00000494754 (WWTR1-013) 149520722-149540266 nonsense_mediated_decay
ENSG00000114744 (COMMD2)
COMM domain containing 2 		ENST00000463077 (COMMD2-007) 149741426-149752398 retained_intron
ENST00000469896 (COMMD2-003) 149750503-149752495 retained_intron
ENST00000473414 (COMMD2-001) 149738470-149752499 protein_coding
ENST00000483146 (COMMD2-008) 149750787-149752058 retained_intron
ENST00000483708 (COMMD2-006) 149741575-149752450 nonsense_mediated_decay
ENST00000490008 (COMMD2-004) 149751811-149752489 retained_intron
ENST00000491617 (COMMD2-005) 149741390-149752472 nonsense_mediated_decay
ENSG00000241985 (WWTR1-IT1)
WWTR1 intronic transcript 1 (non-protein coding) 		ENST00000463167 (WWTR1-IT1-001) 149648997-149650184 sense_intronic
ENSG00000252581 (RNU6-1098P)
RNA, U6 small nuclear 1098, pseudogene 		ENST00000516772 (RNU6-1098P-201) 149525631-149525726 snRNA
CIL_0002R8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027803-ENSMUSG00000036513 CGP 10090 3:57455649-57651715
GeneTranscriptPositionBiotype
ENSMUSG00000027803 (Wwtr1)
WW domain containing transcription regulator 1 		ENSMUST00000029380 (Wwtr1-001) 57455649-57575828 protein_coding
ENSMUST00000120977 (Wwtr1-002) 57455782-57575910 protein_coding
ENSMUSG00000036513 (Commd2)
COMM domain containing 2 		ENSMUST00000041954 (Commd2-002) 57646359-57651708 nonsense_mediated_decay
ENSMUST00000160959 (Commd2-001) 57642904-57651693 protein_coding
ENSMUST00000163087 (Commd2-003) 57651102-57651715 retained_intron
ENSMUSG00000083538 (Gm16016)
predicted gene 16016 		ENSMUST00000120831 (Gm16016-001) 57528232-57528781 processed_pseudogene
ENSMUSG00000097339 (Gm26671)
predicted gene, 26671 		ENSMUST00000180423 (Gm26671-201) 57620905-57625818 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002R8_0001ENSG00000018408ENST00000360632ENST00000460517ENST00000465804ENST00000467467ENST00000471586ENST00000472417ENST00000474080ENST00000475579ENST00000479238ENST00000485244ENST00000485352ENST00000494754ENSG00000114744ENST00000463077ENST00000469896ENST00000473414ENST00000483146ENST00000483708ENST00000490008ENST00000491617ENSG00000241985ENST00000463167ENSG00000252581ENST00000516772CIL_0002R8_0002ENSMUSG00000027803ENSMUST00000029380ENSMUST00000120977ENSMUSG00000036513ENSMUST00000041954ENSMUST00000160959ENSMUST00000163087ENSMUSG00000083538ENSMUST00000120831ENSMUSG00000097339ENSMUST00000180423
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002R8_0001ENSG00000018408ENST00000360632ENST00000465804ENST00000474080ENSG00000114744ENST00000463077ENST00000473414ENST00000483708ENST00000491617ENSG00000241985ENST00000463167ENSG00000252581ENST00000516772CIL_0002R8_0002ENSMUSG00000027803ENSMUST00000029380ENSMUST00000120977ENSMUSG00000036513ENSMUST00000041954ENSMUST00000160959ENSMUSG00000083538ENSMUST00000120831ENSMUSG00000097339ENSMUST00000180423
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000018408 ENST00000360632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.466±0.00 N/A N/A N/A
ENST00000460517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465804 N/A N/A 1.696±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 13.824±0.00 2.403±0.00 0.750±0.00
ENST00000467467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471586 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.325±0.00 N/A N/A N/A
ENST00000475579 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485244 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000114744 ENST00000463077 N/A N/A 1.341±0.00 2.073±0.00 7.335±0.00 4.435±0.00 1.265±0.00 1.191±0.00 4.545±0.00 5.942±0.00 2.125±0.00 3.557±0.00 4.144±0.00 N/A
ENST00000469896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473414 3.576±0.00 4.752±0.00 1.722±0.00 3.028±0.23 2.594±0.28 1.217±0.14 1.328±0.24 2.405±1.25 1.697±0.44 3.263±0.15 0.704±0.46 3.889±1.26 4.059±0.76 3.533±0.73
ENST00000483146 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.050±0.00 N/A
ENST00000490008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491617 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.890±0.00 N/A N/A N/A
ENSG00000241985 ENST00000463167 0.324±0.00 0.552±0.00 N/A 0.282±0.00 0.640±0.00 0.376±0.08 0.524±0.00 0.393±0.00 0.057±0.00 0.609±0.00 N/A 0.225±0.12 0.110±0.00 0.391±0.00
ENSG00000252581 ENST00000516772 0.523±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.194±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027803 ENSMUST00000029380 41.851±7.57 29.966±4.88 30.841±0.57 5.478±3.77 27.350±9.93 15.169±0.85 16.835±1.72 19.584±2.52 3.096±1.17 50.930±7.01 4.964±0.55 42.308±17.47 17.283±12.00 2.517±1.90
ENSMUST00000120977 N/A N/A N/A 1.007±0.00 N/A N/A N/A N/A N/A N/A N/A 10.889±2.72 13.299±2.30 3.224±1.84
ENSMUSG00000036513 ENSMUST00000041954 12.554±1.75 8.232±1.41 14.522±4.64 13.033±7.89 10.539±3.21 6.425±1.56 5.615±0.25 11.962±1.41 9.988±3.49 10.915±1.09 5.996±0.91 11.799±3.90 19.979±9.43 3.871±1.30
ENSMUST00000160959 1.916±0.38 1.092±0.24 1.398±0.89 1.244±0.63 1.298±0.49 1.650±0.52 0.566±0.10 1.457±0.24 1.275±0.46 2.558±0.41 0.510±0.04 2.214±1.00 0.901±0.27 0.522±0.26
ENSMUST00000163087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000083538 ENSMUST00000120831 0.382±0.05 0.273±0.00 N/A N/A 0.198±0.08 N/A 0.222±0.03 0.248±0.16 0.017±0.00 0.247±0.14 0.109±0.01 0.309±0.27 N/A N/A
ENSMUSG00000097339 ENSMUST00000180423 0.301±0.13 0.382±0.00 N/A 0.106±0.03 0.551±0.37 N/A 0.038±0.00 0.041±0.00 0.016±0.01 1.322±0.00 0.047±0.01 0.331±0.13 0.088±0.03 N/A

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