C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000429766 AC073900.4-001 ENSG00000224475 9606 - 7:97200708-97201483 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLungMuscleOvaryTestisENST00000429766
Transcript ID Adipose Adrenal Breast Colon Kidney Lung Muscle Ovary Testis
ENST00000429766 0.061±0.00 0.022±0.00 0.045±0.00 0.041±0.00 0.044±0.00 0.021±0.00 0.075±0.00 0.057±0.00 0.078±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VC CIL_0008VC_0001 VISTA 7:96704270-97304991
CIL_0003BH CIL_0003BH_0002 CGP 7:97116590-97740472

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000085365 Gm16477-001 processed_pseudogene Mus_musculus 0 592
ENSMUST00000118791 Rpl7a-ps11-001 processed_pseudogene Mus_musculus 0 575
ENSMUST00000190511 RP23-58N8.1-001 processed_pseudogene Mus_musculus 0 575
ENSMUST00000183380 Gm17828-001 processed_pseudogene Mus_musculus 0 571
ENSMUST00000145247 Gm6286-001 processed_pseudogene Mus_musculus 0 564
ENSMUST00000071172 RP23-58N8.4-001 processed_pseudogene Mus_musculus 0 564
ENSMUST00000102898 Rpl7a-001 protein_coding Mus_musculus 0 564
ENSMUST00000090170 Rpl7a-ps3-201 protein_coding Mus_musculus 0 555
ENSMUST00000190579 Rpl7a-ps10-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000095218 Rpl7a-ps5-201 protein_coding Mus_musculus 0 553
ENSMUST00000119745 Gm13864-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000096427 Gm17415-001 processed_pseudogene Mus_musculus 0 547
ENSMUST00000162120 Gm7418-001 processed_pseudogene Mus_musculus 0 525
ENSMUST00000191231 RP24-217I2.2-001 processed_pseudogene Mus_musculus 0 523
ENSMUST00000120384 Rpl7a-ps12-001 processed_pseudogene Mus_musculus 0 520
ENSMUST00000120032 Gm13666-001 processed_pseudogene Mus_musculus 0 501
ENSMUST00000117398 Gm8250-001 processed_pseudogene Mus_musculus 0 490
ENSMUST00000171235 Gm5459-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000151645 Gm7847-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000122355 Gm11760-001 processed_pseudogene Mus_musculus 0 457
ENSMUST00000136269 Rpl7a-002 processed_transcript Mus_musculus 0 449
ENSMUST00000137376 Rpl7a-004 processed_transcript Mus_musculus 0 446
ENSMUST00000118838 Gm11362-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000143678 Rpl7a-003 processed_transcript Mus_musculus 0 255
ENSMUST00000118404 Gm12713-001 processed_pseudogene Mus_musculus 0.000000000000005 86
ENSMUST00000119982 Gm15007-001 processed_pseudogene Mus_musculus 0.000001 58

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