C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATPase, Na+/K+ transporting, alpha 3 polypeptide
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080882 Atp1a3-001 ENSMUSG00000040907 10090 - 7:24978167-25005937 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080882
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080882 2.961±0.23 56.430±6.16 0.310±0.09 330.184±341.58 6.500±1.59 0.619±0.28 0.415±0.14 0.522±0.12 0.226±0.18 2.277±0.13 0.078±0.04 8.487±5.96 0.371±0.19 0.080±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030U CIL_00030U_0002 CGP 7:24969750-25005957
CIL_0003YN CIL_0003YN_0002 CGP 7:24978167-25072369

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005391 ISS sodium:potassium-exchanging ATPase activity
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005783 ISS endoplasmic reticulum
GO:0005794 ISS Golgi apparatus
GO:0005886 ISS plasma membrane
GO:0006754 IEA ATP biosynthetic process
GO:0006813 IEA potassium ion transport
GO:0007613 IMP memory
GO:0008344 IMP adult locomotory behavior
GO:0008542 IMP visual learning
GO:0016021 IEA integral component of membrane
GO:0035235 IMP ionotropic glutamate receptor signaling pathway
GO:0035725 IEA sodium ion transmembrane transport
GO:0042493 IMP response to drug
GO:0045202 ISS synapse
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000104950 atp1a3a-001 protein_coding Danio_rerio 0 2444
ENSDART00000124130 atp1a3b-201 protein_coding Danio_rerio 0 2036
ENSDART00000149975 atp1a3b-001 protein_coding Danio_rerio 0 2036
ENSDART00000093298 atp1a2a-201 protein_coding Danio_rerio 0 1707
ENSDART00000011188 atp1a2a-001 protein_coding Danio_rerio 0 1707
ENSDART00000149502 atp1a3b-003 retained_intron Danio_rerio 0 403
ENST00000218548 ATP12A-201 protein_coding Homo_sapiens 0 241
ENST00000295598 ATP1A1-001 protein_coding Homo_sapiens 0 1958
ENST00000302102 ATP1A3-001 protein_coding Homo_sapiens 0 4311
ENST00000361216 ATP1A2-001 protein_coding Homo_sapiens 0 2529
ENST00000368081 ATP1A4-001 protein_coding Homo_sapiens 0 1714
ENST00000369496 ATP1A1-201 protein_coding Homo_sapiens 0 1958
ENST00000381946 ATP12A-001 protein_coding Homo_sapiens 0 285
ENST00000392233 ATP1A2-003 protein_coding Homo_sapiens 0 2423
ENST00000418334 ATP1A4-002 processed_transcript Homo_sapiens 0 929
ENST00000441343 ATP1A3-002 non_stop_decay Homo_sapiens 0 4124
ENST00000447527 ATP1A2-008 protein_coding Homo_sapiens 0 1522
ENST00000465007 ATP1A3-009 retained_intron Homo_sapiens 0 202
ENST00000468774 ATP1A3-006 processed_transcript Homo_sapiens 0 392
ENST00000469023 ATP1A4-003 retained_intron Homo_sapiens 0 1029
ENST00000472488 ATP1A2-002 retained_intron Homo_sapiens 0 2342
ENST00000473086 ATP1A3-011 protein_coding Homo_sapiens 0 1131
ENST00000477338 ATP1A4-004 nonsense_mediated_decay Homo_sapiens 0 1356
ENST00000485672 ATP1A3-003 retained_intron Homo_sapiens 0 409
ENST00000537345 ATP1A1-202 protein_coding Homo_sapiens 0 1958
ENST00000543770 ATP1A3-007 protein_coding Homo_sapiens 0 4167
ENST00000545399 ATP1A3-008 protein_coding Homo_sapiens 0 4167
ENST00000602133 ATP1A3-005 protein_coding Homo_sapiens 0 4169

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