C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000496255 RP11-473P24.2-001 ENSG00000243977 9606 - 3:179649494-179650200 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000496255
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000496255 0.047±0.00 0.394±0.00 0.133±0.00 0.025±0.00 0.023±0.00 0.093±0.00 0.102±0.00 0.066±0.00 0.307±0.00 0.066±0.00 0.186±0.00 0.105±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00049V CIL_00049V_0002 CGP 3:179604690-179789401

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119546 H3f3a-ps1-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000119544 H3f3a-ps2-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000179671 Gm10257-201 processed_pseudogene Mus_musculus 0 444
ENSMUST00000162814 H3f3a-003 protein_coding Mus_musculus 0 444
ENSMUST00000161308 H3f3a-001 protein_coding Mus_musculus 0 444
ENSMUST00000119560 Gm12657-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000119459 H3f3c-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000077016 Gm6421-201 processed_pseudogene Mus_musculus 0 427
ENSMUST00000081026 H3f3a-006 protein_coding Mus_musculus 0 425
ENSMUST00000121118 Gm13529-001 processed_pseudogene Mus_musculus 0 422
ENSMUST00000120752 Gm3835-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000159789 H3f3a-007 protein_coding Mus_musculus 0 409
ENSMUST00000179566 Gm6132-201 processed_pseudogene Mus_musculus 0 407
ENSMUST00000121719 Gm12271-001 processed_pseudogene Mus_musculus 0 399
ENSMUST00000171334 Gm4938-201 processed_pseudogene Mus_musculus 0 399
ENSMUST00000169993 Gm17136-001 processed_pseudogene Mus_musculus 0 398
ENSMUST00000120730 Gm15220-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000116640 Gm14807-001 processed_pseudogene Mus_musculus 0 313
ENSMUST00000159441 H3f3a-005 retained_intron Mus_musculus 0 305
ENSMUST00000174739 Gm20545-001 processed_pseudogene Mus_musculus 0 246
ENSMUST00000186232 RP23-128A11.4-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000118841 Gm14669-001 processed_pseudogene Mus_musculus 1e-35 154
ENSMUST00000119709 Gm14937-001 processed_pseudogene Mus_musculus 2e-28 130

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