C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004FM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000119401-ENSG00000136869 CGP 9606 9:116687302-117716871
GeneTranscriptPositionBiotype
ENSG00000119401 (TRIM32)
tripartite motif containing 32 		ENST00000373983 (TRIM32-001) 116687330-116701300 protein_coding
ENST00000411410 (TRIM32-002) 116687343-116698260 protein_coding
ENST00000450136 (TRIM32-201) 116687302-116701298 protein_coding
ENSG00000136869 (TLR4)
toll-like receptor 4 		ENST00000355622 (TLR4-001) 117704372-117716871 protein_coding
ENST00000394487 (TLR4-002) 117704332-117715775 protein_coding
ENST00000472304 (TLR4-003) 117704389-117714952 processed_transcript
ENST00000490685 (TLR4-004) 117708197-117708979 processed_transcript
ENSG00000148219 (ASTN2)
astrotactin 2 		ENST00000288520 (ASTN2-002) 116425228-116687215 protein_coding
ENST00000313400 (ASTN2-201) 116425225-117415039 protein_coding
ENST00000341734 (ASTN2-006) 116425228-116687234 protein_coding
ENST00000358637 (ASTN2-004) 116610900-116687221 protein_coding
ENST00000361209 (ASTN2-001) 116425228-117415070 protein_coding
ENST00000361477 (ASTN2-202) 116425590-117415039 protein_coding
ENST00000373986 (ASTN2-005) 116425228-117214553 protein_coding
ENST00000417725 (ASTN2-003) 116437223-116440735 protein_coding
ENSG00000201140 (RN7SKP128)
RNA, 7SK small nuclear pseudogene 128 		ENST00000364270 (RN7SKP128-201) 117197118-117197420 misc_RNA
ENSG00000222413 (RN7SKP125)
RNA, 7SK small nuclear pseudogene 125 		ENST00000410481 (RN7SKP125-201) 117276985-117277286 misc_RNA
ENSG00000230734 (RPL10P3)
ribosomal protein L10 pseudogene 3 		ENST00000431607 (RPL10P3-001) 117180628-117181095 processed_pseudogene
ENSG00000233569 (RP11-500B12.1)
 ENST00000450938 (RP11-500B12.1-001) 117648606-117657027 lincRNA
ENSG00000235133 (RPL35AP22)
ribosomal protein L35a pseudogene 22 		ENST00000436855 (RPL35AP22-001) 117685254-117685588 processed_pseudogene
ENSG00000265662 (AL354981.1)
 ENST00000583553 (AL354981.1-201) 117099007-117099106 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0004FM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000051675-ENSMUSG00000039005 CGP 10090 4:65604986-66930284
GeneTranscriptPositionBiotype
ENSMUSG00000028373 (Astn2)
astrotactin 2 		ENSMUST00000068214 (Astn2-001) 65380803-66404611 protein_coding
ENSMUST00000084496 (Astn2-201) 65380803-66404483 protein_coding
ENSMUSG00000039005 (Tlr4)
toll-like receptor 4 		ENSMUST00000048096 (Tlr4-001) 66827584-66842800 protein_coding
ENSMUST00000107365 (Tlr4-004) 66827613-66930284 protein_coding
ENSMUST00000143580 (Tlr4-002) 66827619-66839429 processed_transcript
ENSMUST00000147008 (Tlr4-003) 66828202-66839618 processed_transcript
ENSMUSG00000051675 (Trim32)
tripartite motif-containing 32 		ENSMUST00000050850 (Trim32-001) 65604986-65616238 protein_coding
ENSMUST00000107366 (Trim32-002) 65604986-65616238 protein_coding
ENSMUST00000155978 (Trim32-003) 65605249-65613616 protein_coding
ENSMUST00000156922 (Trim32-004) 65605249-65613756 protein_coding
ENSMUSG00000082053 (Gm11220)
predicted gene 11220 		ENSMUST00000118844 (Gm11220-001) 66725070-66725544 processed_pseudogene
ENSMUSG00000083080 (Gm11484)
predicted gene 11484 		ENSMUST00000119808 (Gm11484-001) 66353849-66354186 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004FM_0001ENSG00000119401ENST00000373983ENST00000411410ENST00000450136ENSG00000136869ENST00000355622ENST00000394487ENST00000472304ENST00000490685ENSG00000148219ENST00000288520ENST00000313400ENST00000341734ENST00000358637ENST00000361209ENST00000361477ENST00000373986ENST00000417725ENSG00000201140ENST00000364270ENSG00000222413ENST00000410481ENSG00000230734ENST00000431607ENSG00000233569ENST00000450938ENSG00000235133ENST00000436855ENSG00000265662ENST00000583553CIL_0004FM_0002ENSMUSG00000028373ENSMUST00000068214ENSMUST00000084496ENSMUSG00000039005ENSMUST00000048096ENSMUST00000107365ENSMUST00000143580ENSMUST00000147008ENSMUSG00000051675ENSMUST00000050850ENSMUST00000107366ENSMUST00000155978ENSMUST00000156922ENSMUSG00000082053ENSMUST00000118844ENSMUSG00000083080ENSMUST00000119808
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004FM_0001ENSG00000119401ENST00000373983ENST00000450136ENSG00000136869ENST00000355622ENST00000394487ENST00000472304ENSG00000148219ENST00000288520ENST00000313400ENST00000341734ENST00000358637ENST00000361209ENST00000361477ENST00000373986ENSG00000201140ENST00000364270ENSG00000222413ENST00000410481ENSG00000230734ENST00000431607ENSG00000233569ENST00000450938ENSG00000235133ENST00000436855ENSG00000265662ENST00000583553CIL_0004FM_0002ENSMUSG00000028373ENSMUST00000068214ENSMUST00000084496ENSMUSG00000039005ENSMUST00000048096ENSMUST00000107365ENSMUST00000143580ENSMUST00000147008ENSMUSG00000051675ENSMUST00000050850ENSMUST00000107366ENSMUST00000155978ENSMUST00000156922ENSMUSG00000082053ENSMUST00000118844ENSMUSG00000083080ENSMUST00000119808
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000119401 ENST00000373983 1.586±0.00 2.197±0.00 N/A 1.138±0.34 2.009±0.43 1.937±0.00 1.426±0.24 2.146±1.27 1.225±0.96 0.784±0.35 1.482±0.00 2.780±1.03 2.928±0.43 N/A
ENST00000411410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450136 N/A N/A N/A 0.882±0.00 N/A 0.528±0.10 1.152±0.00 N/A 0.166±0.00 0.741±0.00 N/A 3.252±0.00 N/A 3.989±0.00
ENSG00000136869 ENST00000355622 12.873±0.00 N/A 0.969±0.00 0.968±0.19 1.818±0.21 0.796±0.19 0.876±0.58 2.226±0.76 0.747±0.40 2.392±0.54 N/A 0.495±0.03 2.678±0.63 N/A
ENST00000394487 N/A N/A N/A N/A N/A N/A 0.670±0.00 0.664±0.00 N/A N/A 0.431±0.00 1.193±0.00 N/A 0.060±0.00
ENST00000472304 N/A N/A 0.715±0.00 1.986±0.00 5.194±0.00 1.822±0.00 0.979±0.00 0.752±0.00 3.337±0.00 1.872±0.00 2.351±0.00 1.881±0.00 N/A N/A
ENST00000490685 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000148219 ENST00000288520 N/A N/A N/A N/A 0.208±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000313400 N/A N/A N/A N/A N/A N/A 0.731±0.00 N/A N/A 0.839±0.00 N/A 0.277±0.00 0.566±0.20 N/A
ENST00000341734 0.434±0.00 0.758±0.00 N/A N/A 0.695±0.16 2.480±0.00 0.586±0.39 0.735±0.00 N/A N/A 1.091±0.20 1.105±0.00 0.911±0.00 6.319±0.00
ENST00000358637 0.621±0.00 1.216±0.00 N/A 1.377±0.18 0.994±0.21 0.422±0.10 0.873±0.06 0.972±0.19 0.473±0.00 0.655±0.33 0.249±0.02 2.032±1.58 2.661±0.00 6.380±5.41
ENST00000361209 N/A 0.410±0.00 N/A 5.384±0.00 N/A 0.921±0.00 N/A N/A N/A N/A N/A 0.610±0.36 N/A 2.279±0.55
ENST00000361477 N/A N/A N/A 0.496±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.507±0.00 N/A
ENST00000373986 N/A N/A N/A 6.420±0.00 0.831±0.00 0.875±0.00 0.591±0.00 1.067±0.00 0.282±0.00 N/A N/A 0.426±0.06 0.332±0.12 4.002±1.28
ENST00000417725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000201140 ENST00000364270 N/A N/A N/A N/A N/A N/A N/A N/A 1.411±0.00 N/A N/A N/A N/A N/A
ENSG00000222413 ENST00000410481 N/A N/A N/A 0.491±0.00 N/A N/A N/A N/A 1.530±0.00 N/A N/A N/A N/A N/A
ENSG00000230734 ENST00000431607 1.222±0.00 0.750±0.00 N/A 0.570±0.20 1.566±0.56 0.648±0.53 0.333±0.03 0.784±0.40 0.222±0.00 0.585±0.15 3.862±2.54 1.540±1.91 2.322±2.20 0.769±0.31
ENSG00000233569 ENST00000450938 N/A 0.008±0.00 0.130±0.00 0.023±0.01 N/A N/A N/A 0.247±0.00 0.026±0.00 0.039±0.00 N/A 0.048±0.03 N/A 0.128±0.03
ENSG00000235133 ENST00000436855 N/A 0.076±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000265662 ENST00000583553 0.257±0.00 N/A N/A 1.761±0.00 N/A N/A N/A 0.288±0.00 N/A N/A N/A N/A N/A 0.994±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028373 ENSMUST00000068214 N/A 0.189±0.00 0.468±0.24 1.889±0.12 0.233±0.16 0.113±0.00 0.130±0.01 0.461±0.18 0.095±0.05 1.294±0.15 0.138±0.00 0.660±0.43 0.094±0.00 N/A
ENSMUST00000084496 3.033±2.29 0.843±0.18 0.532±0.26 5.201±2.65 0.406±0.15 0.589±0.08 0.197±0.08 0.815±0.39 0.164±0.11 4.149±0.51 0.296±0.04 1.223±0.51 0.108±0.05 0.136±0.07
ENSMUSG00000039005 ENSMUST00000048096 3.179±0.35 0.402±0.15 1.393±0.05 0.097±0.00 2.298±0.31 1.571±0.34 1.013±0.15 0.756±0.18 0.313±0.15 2.732±0.85 0.240±0.09 0.999±0.38 0.293±0.16 0.058±0.03
ENSMUST00000107365 N/A N/A N/A N/A N/A N/A 0.390±0.08 N/A 0.072±0.00 N/A N/A 0.492±0.10 N/A N/A
ENSMUST00000143580 N/A 0.770±0.14 N/A N/A N/A 1.042±0.00 N/A 1.044±0.00 0.392±0.19 N/A N/A 1.294±0.36 N/A 0.158±0.07
ENSMUST00000147008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.679±0.00 N/A
ENSMUSG00000051675 ENSMUST00000050850 2.931±0.46 5.483±2.45 5.401±0.31 27.141±1.62 3.051±0.93 1.820±1.09 2.244±0.94 4.045±1.39 1.742±0.66 2.978±0.99 1.873±0.49 6.884±2.43 3.739±2.36 2.154±1.54
ENSMUST00000107366 2.861±0.45 2.857±1.24 3.290±0.56 12.586±1.43 1.299±0.35 3.077±1.17 2.077±0.29 2.266±0.33 0.890±0.28 1.143±0.26 1.037±0.23 6.864±3.51 1.618±0.43 1.279±0.17
ENSMUST00000155978 N/A 6.505±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156922 N/A 7.880±1.28 N/A N/A 5.492±1.36 6.451±1.16 N/A N/A N/A 4.953±1.16 N/A 15.293±2.88 N/A 2.948±0.00
ENSMUSG00000082053 ENSMUST00000118844 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.156±0.00
ENSMUSG00000083080 ENSMUST00000119808 N/A N/A 0.044±0.00 0.276±0.00 N/A N/A N/A N/A N/A 0.289±0.00 N/A N/A N/A N/A

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