C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L17, pseudogene 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120241 Rpl17-ps4-001 ENSMUSG00000084345 10090 - 4:63895545-63896099 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartLiverLungOvaryPlacentaENSMUST00000120241
Transcript ID Adipose Bladder Brain Breast Heart Liver Lung Ovary Placenta
ENSMUST00000120241 0.125±0.02 0.080±0.06 0.612±0.53 0.358±0.21 0.096±0.00 0.630±1.12 0.176±0.00 0.094±0.00 0.061±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OU CIL_0004OU_0002 CGP 4:63831308-64047015

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332968 RPL17-C18orf32-003 protein_coding Homo_sapiens 0 538
ENST00000391360 RP11-347C18.1-001 processed_pseudogene Homo_sapiens 0 549
ENST00000394133 RP11-624L12.1-001 processed_pseudogene Homo_sapiens 0 608
ENST00000396131 RPL17P50-001 processed_pseudogene Homo_sapiens 0 555
ENST00000404330 RPL17P25-001 processed_pseudogene Homo_sapiens 0 577
ENST00000404382 RP3-472M2.2-001 processed_pseudogene Homo_sapiens 0 327
ENST00000404780 RP3-403A15.1-001 processed_pseudogene Homo_sapiens 0 396
ENST00000407033 RPL17P26-001 processed_pseudogene Homo_sapiens 0 603
ENST00000414070 RP11-20O24.4-001 processed_pseudogene Homo_sapiens 0 699
ENST00000416091 AC007272.3-001 processed_pseudogene Homo_sapiens 0 418
ENST00000417063 AC020983.5-001 processed_pseudogene Homo_sapiens 0 568
ENST00000417593 RPL17P11-001 processed_pseudogene Homo_sapiens 0 372
ENST00000418495 RPL17-201 protein_coding Homo_sapiens 0 710
ENST00000419491 RPL17P17-001 processed_pseudogene Homo_sapiens 0 468
ENST00000420302 RP11-215A21.2-001 processed_pseudogene Homo_sapiens 0 645
ENST00000422360 RPL17P43-001 processed_pseudogene Homo_sapiens 0 436
ENST00000443728 RPL17P49-001 processed_pseudogene Homo_sapiens 1e-38 163
ENST00000444020 RP11-1029M24.1-001 processed_pseudogene Homo_sapiens 0 603
ENST00000445757 AC007677.2-001 processed_pseudogene Homo_sapiens 0 363
ENST00000446498 RP3-476K8.4-001 processed_pseudogene Homo_sapiens 0 606
ENST00000447415 RP4-612B15.2-001 processed_pseudogene Homo_sapiens 0 643
ENST00000448403 RP11-383G10.3-001 processed_pseudogene Homo_sapiens 0 580
ENST00000452862 AC144530.1-001 processed_pseudogene Homo_sapiens 0 654
ENST00000461464 RPL17P20-001 processed_pseudogene Homo_sapiens 0 544
ENST00000467688 RPL17P22-001 processed_pseudogene Homo_sapiens 0 619
ENST00000469329 RPL17P41-001 processed_pseudogene Homo_sapiens 0 547
ENST00000471722 RP4-706A16.3-001 processed_pseudogene Homo_sapiens 0 710
ENST00000475372 RPL17P44-001 processed_pseudogene Homo_sapiens 0 544
ENST00000483964 RP11-7F18.1-001 processed_pseudogene Homo_sapiens 0 529
ENST00000488371 RP11-864J10.2-001 processed_pseudogene Homo_sapiens 0 460
ENST00000488887 AF131215.1-001 processed_pseudogene Homo_sapiens 0 372
ENST00000490729 RPL17P37-001 processed_pseudogene Homo_sapiens 0 414
ENST00000491913 RPL17P2-001 processed_pseudogene Homo_sapiens 0 394
ENST00000498103 RP11-592N21.1-001 processed_pseudogene Homo_sapiens 0 688
ENST00000498256 RPL17P33-001 processed_pseudogene Homo_sapiens 0 641
ENST00000504072 CTD-2218G20.1-001 processed_pseudogene Homo_sapiens 2.8026e-45 183
ENST00000524791 RP11-757C15.4-001 processed_pseudogene Homo_sapiens 0 302
ENST00000577910 RPL17-C18orf32-002 nonsense_mediated_decay Homo_sapiens 0 710
ENST00000578532 RPL17-017 protein_coding Homo_sapiens 0 649
ENST00000579248 RPL17-018 protein_coding Homo_sapiens 0 710
ENST00000579408 RPL17-003 protein_coding Homo_sapiens 0 710
ENST00000579820 C18orf32-201 protein_coding Homo_sapiens 0 538
ENST00000580210 RPL17-015 protein_coding Homo_sapiens 0 665
ENST00000580261 RPL17-001 protein_coding Homo_sapiens 0 710
ENST00000580387 RPL17-019 protein_coding Homo_sapiens 0 492
ENST00000581091 RPL17-012 processed_transcript Homo_sapiens 0 540
ENST00000581373 RPL17-002 protein_coding Homo_sapiens 0 610
ENST00000581741 RPL17-009 retained_intron Homo_sapiens 0 368
ENST00000582935 RPL17-013 retained_intron Homo_sapiens 0 305
ENST00000583036 RPL17-008 protein_coding Homo_sapiens 0 532
ENST00000583637 RPL17-016 protein_coding Homo_sapiens 0 665
ENST00000584364 RPL17-014 retained_intron Homo_sapiens 0 614
ENST00000584895 RPL17-C18orf32-001 protein_coding Homo_sapiens 0 638
ENST00000596405 CTD-2550O8.7-001 processed_pseudogene Homo_sapiens 0 490
ENST00000605218 RPL17P51-001 processed_pseudogene Homo_sapiens 2e-33 145
ENST00000615479 RPL17-025 protein_coding Homo_sapiens 0 370
ENST00000615760 RPL17-024 protein_coding Homo_sapiens 0 503
ENST00000617346 RPL17-022 protein_coding Homo_sapiens 0 638
ENST00000618613 RPL17-202 protein_coding Homo_sapiens 0 710
ENST00000618619 RPL17-023 protein_coding Homo_sapiens 0 710

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