C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type V, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000449557 SCN5A-010 ENSG00000183873 9606 - 3:38550321-38633316 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartLiverLungENST00000449557
Transcript ID Adipose Brain Breast Heart Liver Lung
ENST00000449557 0.026±0.00 0.045±0.00 0.051±0.00 4.928±0.00 0.093±0.00 0.086±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BE CIL_0008BE_0001 VISTA 3:38261144-38866061
CIL_0005VU CIL_0005VU_0001 CGP 3:38496127-38649673
CIL_0004RF CIL_0004RF_0001 CGP 3:38548057-38794010

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005216 IEA ion channel activity
GO:0005248 IEA voltage-gated sodium channel activity
GO:0006811 IEA ion transport
GO:0006814 IEA sodium ion transport
GO:0016020 IEA membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000065196 Scn5a-201 protein_coding Mus_musculus 0 3975
ENSMUST00000120420 Scn5a-002 protein_coding Mus_musculus 0 3975
ENSMUST00000117911 Scn5a-001 protein_coding Mus_musculus 0 3814
ENSMUST00000084787 Scn10a-201 protein_coding Mus_musculus 0 1565
ENSMUST00000021056 Scn4a-001 protein_coding Mus_musculus 0 1495
ENSMUST00000100067 Scn2a1-201 protein_coding Mus_musculus 0 1079
ENSMUST00000028377 Scn2a1-001 protein_coding Mus_musculus 0 1079
ENSMUST00000169900 Scn9a-203 protein_coding Mus_musculus 0 966
ENSMUST00000100063 Scn9a-201 protein_coding Mus_musculus 0 966
ENSMUST00000164384 Scn9a-202 protein_coding Mus_musculus 0 966
ENSMUST00000112354 Scn9a-002 protein_coding Mus_musculus 0 966
ENSMUST00000100064 Scn9a-001 protein_coding Mus_musculus 0 966
ENSMUST00000066432 Scn3a-201 protein_coding Mus_musculus 0 870
ENSMUST00000100069 Scn3a-001 protein_coding Mus_musculus 0 870
ENSMUST00000112371 Scn1a-201 protein_coding Mus_musculus 0 737
ENSMUST00000094951 Scn1a-005 protein_coding Mus_musculus 0 737
ENSMUST00000077489 Scn1a-004 protein_coding Mus_musculus 0 737
ENSMUST00000112366 Scn1a-001 protein_coding Mus_musculus 0 737
ENSDART00000106534 scn4aa-001 protein_coding Danio_rerio 0 619
ENSMUST00000156865 Scn1a-003 processed_transcript Mus_musculus 0 483
ENSDART00000022761 scn8ab-201 protein_coding Danio_rerio 0 399
ENSDART00000151299 scn8ab-001 protein_coding Danio_rerio 0 399
ENSMUST00000126837 Scn3a-002 protein_coding Mus_musculus 0 274
ENSMUST00000144254 Scn2a1-002 protein_coding Mus_musculus 0 272
ENSDART00000011718 scn1a-201 protein_coding Danio_rerio 0 265
ENSDART00000090979 scn1a-202 protein_coding Danio_rerio 0 265
ENSMUST00000138368 Scn2a1-003 processed_transcript Mus_musculus 0 235

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