C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00059J_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163705-ENSG00000254999 CGP 9606 3:10081317-10127190
GeneTranscriptPositionBiotype
ENSG00000144554 (FANCD2)
Fanconi anemia, complementation group D2 		ENST00000287647 (FANCD2-001) 10026414-10099660 protein_coding
ENST00000383807 (FANCD2-201) 10026429-10101930 protein_coding
ENST00000419585 (FANCD2-002) 10026499-10101930 protein_coding
ENST00000421731 (FANCD2-004) 10049462-10101926 nonsense_mediated_decay
ENST00000431693 (FANCD2-003) 10028620-10041562 protein_coding
ENST00000435522 (FANCD2-005) 10026468-10034513 nonsense_mediated_decay
ENST00000438741 (FANCD2-008) 10034707-10040684 processed_transcript
ENST00000464934 (FANCD2-007) 10046427-10049504 retained_intron
ENST00000470028 (FANCD2-012) 10093288-10101282 processed_transcript
ENST00000470757 (FANCD2-011) 10064355-10072978 processed_transcript
ENST00000480909 (FANCD2-010) 10064693-10072964 retained_intron
ENST00000483276 (FANCD2-006) 10045527-10048059 processed_transcript
ENSG00000163705 (FANCD2OS)
FANCD2 opposite strand 		ENST00000431315 (FANCD2OS-003) 10081317-10108084 processed_transcript
ENST00000436517 (FANCD2OS-004) 10081320-10095347 processed_transcript
ENST00000450616 (FANCD2OS-005) 10081320-10085828 processed_transcript
ENST00000450660 (FANCD2OS-002) 10103937-10108223 protein_coding
ENST00000453223 (FANCD2OS-006) 10102903-10104768 protein_coding
ENST00000524279 (FANCD2OS-001) 10081320-10108231 protein_coding
ENSG00000254999 (BRK1)
BRICK1, SCAR/WAVE actin-nucleating complex subunit 		ENST00000530758 (BRK1-001) 10115592-10127190 protein_coding
CIL_00059J_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000033963-ENSMUSG00000033940 CGP 10090 6:113596761-113616948
GeneTranscriptPositionBiotype
ENSMUSG00000033940 (Brk1)
BRICK1, SCAR/WAVE actin-nucleating complex subunit 		ENSMUST00000035725 (Brk1-201) 113604772-113616948 protein_coding
ENSMUSG00000033963 (Fancd2os)
Fancd2 opposite strand 		ENSMUST00000035870 (Fancd2os-001) 113596762-113600715 protein_coding
ENSMUST00000125139 (Fancd2os-002) 113596761-113600715 nonsense_mediated_decay
ENSMUSG00000034023 (Fancd2)
Fanconi anemia, complementation group D2 		ENSMUST00000036340 (Fancd2-001) 113531682-113597017 protein_coding
ENSMUST00000101051 (Fancd2-002) 113531704-113538719 protein_coding
ENSMUST00000123738 (Fancd2-005) 113551828-113562452 protein_coding
ENSMUST00000124262 (Fancd2-007) 113583418-113586024 retained_intron
ENSMUST00000129462 (Fancd2-006) 113568672-113574598 processed_transcript
ENSMUST00000142453 (Fancd2-004) 113551824-113553990 processed_transcript
ENSMUST00000143535 (Fancd2-003) 113531704-113537836 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00059J_0001ENSG00000144554ENST00000287647ENST00000383807ENST00000419585ENST00000421731ENST00000431693ENST00000435522ENST00000438741ENST00000464934ENST00000470028ENST00000470757ENST00000480909ENST00000483276ENSG00000163705ENST00000431315ENST00000436517ENST00000450616ENST00000450660ENST00000453223ENST00000524279ENSG00000254999ENST00000530758CIL_00059J_0002ENSMUSG00000033940ENSMUST00000035725ENSMUSG00000033963ENSMUST00000035870ENSMUST00000125139ENSMUSG00000034023ENSMUST00000036340ENSMUST00000101051ENSMUST00000123738ENSMUST00000124262ENSMUST00000129462ENSMUST00000142453ENSMUST00000143535
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00059J_0001ENSG00000144554ENST00000287647ENST00000383807ENST00000419585ENST00000421731ENST00000431693ENST00000438741ENST00000464934ENST00000470028ENST00000480909ENSG00000163705ENST00000431315ENST00000450616ENST00000450660ENST00000524279ENSG00000254999ENST00000530758CIL_00059J_0002ENSMUSG00000033940ENSMUST00000035725ENSMUSG00000033963ENSMUST00000035870ENSMUST00000125139ENSMUSG00000034023ENSMUST00000036340ENSMUST00000123738ENSMUST00000124262ENSMUST00000129462ENSMUST00000143535
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144554 ENST00000287647 N/A 0.590±0.00 N/A 0.082±0.05 N/A N/A 0.055±0.00 0.144±0.00 N/A N/A N/A 0.091±0.00 N/A N/A
ENST00000383807 0.142±0.00 0.440±0.00 0.054±0.00 0.208±0.00 0.522±0.20 1.796±0.00 N/A N/A 0.260±0.00 0.571±0.00 0.010±0.00 0.593±0.32 0.275±0.07 2.782±0.72
ENST00000419585 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.341±0.00 N/A 0.520±0.28 1.423±0.00 N/A
ENST00000421731 N/A N/A N/A N/A 0.366±0.00 N/A N/A 0.255±0.00 0.051±0.00 N/A N/A 1.194±0.33 N/A N/A
ENST00000431693 0.161±0.00 0.788±0.00 N/A N/A N/A 0.069±0.00 0.072±0.00 N/A 0.067±0.00 0.101±0.00 0.083±0.00 N/A N/A N/A
ENST00000435522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.138±0.00 N/A N/A N/A
ENST00000464934 N/A N/A N/A N/A N/A 0.286±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.121±0.00 N/A N/A N/A
ENST00000470757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480909 N/A N/A 1.005±0.00 N/A N/A N/A N/A N/A 0.795±0.00 N/A 0.134±0.00 N/A N/A N/A
ENST00000483276 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000163705 ENST00000431315 N/A N/A N/A N/A N/A N/A 0.395±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000436517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450616 N/A N/A N/A N/A N/A N/A N/A N/A 0.367±0.00 0.690±0.00 N/A N/A N/A N/A
ENST00000450660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.001±0.00
ENST00000453223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.563±8.85
ENSG00000254999 ENST00000530758 108.723±0.00 98.441±0.00 9.045±0.00 50.356±31.93 55.391±48.53 70.483±60.13 24.441±20.67 43.219±32.90 23.604±9.81 51.916±46.42 21.698±19.68 67.362±50.85 67.134±26.85 86.285±46.38
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000033940 ENSMUST00000035725 107.141±8.16 133.949±19.55 90.629±11.63 63.497±30.69 118.757±28.02 66.903±7.94 63.173±2.70 101.985±8.25 62.063±12.97 96.161±13.20 31.516±2.37 73.345±16.84 56.160±27.39 38.918±0.54
ENSMUSG00000033963 ENSMUST00000035870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.831±0.00
ENSMUST00000125139 N/A N/A N/A N/A N/A N/A N/A 0.445±0.19 N/A N/A 0.064±0.00 N/A N/A 12.165±0.50
ENSMUSG00000034023 ENSMUST00000036340 0.491±0.37 0.181±0.06 1.679±0.31 1.464±0.80 0.318±0.16 0.356±0.11 0.047±0.01 0.120±0.01 2.607±2.56 0.377±0.18 0.061±0.01 0.740±0.23 1.907±1.22 4.223±1.09
ENSMUST00000101051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123738 N/A N/A N/A N/A N/A N/A 0.133±0.06 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124262 N/A 0.572±0.09 N/A N/A N/A 0.298±0.00 0.049±0.02 0.147±0.00 0.084±0.03 0.272±0.06 0.133±0.03 N/A N/A N/A
ENSMUST00000129462 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.179±0.00 N/A N/A N/A
ENSMUST00000142453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143535 N/A 0.496±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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