C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 16111
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162128 Gm16111-001 ENSMUSG00000090008 10090 + 5:21889780-21890064 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverMusclePlacentaTestisENSMUST00000162128
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Muscle Placenta Testis
ENSMUST00000162128 0.694±0.16 0.755±0.00 0.147±0.00 1.462±0.76 0.875±0.09 0.814±0.00 0.585±0.00 0.806±0.69 0.248±0.09 0.225±0.00 0.438±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005C9 CIL_0005C9_0002 CGP 5:21810655-22344702
CIL_00040Z CIL_00040Z_0002 CGP 5:21884454-22550429

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332968 RPL17-C18orf32-003 protein_coding Homo_sapiens 0 289
ENST00000391360 RP11-347C18.1-001 processed_pseudogene Homo_sapiens 0 305
ENST00000394133 RP11-624L12.1-001 processed_pseudogene Homo_sapiens 0 320
ENST00000407033 RPL17P26-001 processed_pseudogene Homo_sapiens 0 303
ENST00000414070 RP11-20O24.4-001 processed_pseudogene Homo_sapiens 0 339
ENST00000418495 RPL17-201 protein_coding Homo_sapiens 0 350
ENST00000420302 RP11-215A21.2-001 processed_pseudogene Homo_sapiens 0 346
ENST00000429934 RP11-383F6.1-001 processed_pseudogene Homo_sapiens 0 193
ENST00000443728 RPL17P49-001 processed_pseudogene Homo_sapiens 5e-27 124
ENST00000444020 RP11-1029M24.1-001 processed_pseudogene Homo_sapiens 0 315
ENST00000446498 RP3-476K8.4-001 processed_pseudogene Homo_sapiens 0 313
ENST00000448403 RP11-383G10.3-001 processed_pseudogene Homo_sapiens 0 309
ENST00000452862 AC144530.1-001 processed_pseudogene Homo_sapiens 0 316
ENST00000461464 RPL17P20-001 processed_pseudogene Homo_sapiens 0 294
ENST00000467688 RPL17P22-001 processed_pseudogene Homo_sapiens 0 315
ENST00000471722 RP4-706A16.3-001 processed_pseudogene Homo_sapiens 0 344
ENST00000483964 RP11-7F18.1-001 processed_pseudogene Homo_sapiens 0 254
ENST00000498103 RP11-592N21.1-001 processed_pseudogene Homo_sapiens 0 344
ENST00000498256 RPL17P33-001 processed_pseudogene Homo_sapiens 0 303
ENST00000511559 RP11-115A14.1-001 processed_pseudogene Homo_sapiens 0 206
ENST00000560214 RP11-14C10.2-001 processed_pseudogene Homo_sapiens 7e-38 161
ENST00000577910 RPL17-C18orf32-002 nonsense_mediated_decay Homo_sapiens 0 350
ENST00000578532 RPL17-017 protein_coding Homo_sapiens 0 300
ENST00000579248 RPL17-018 protein_coding Homo_sapiens 0 350
ENST00000579408 RPL17-003 protein_coding Homo_sapiens 0 350
ENST00000579820 C18orf32-201 protein_coding Homo_sapiens 0 289
ENST00000580210 RPL17-015 protein_coding Homo_sapiens 0 350
ENST00000580261 RPL17-001 protein_coding Homo_sapiens 0 350
ENST00000580387 RPL17-019 protein_coding Homo_sapiens 1e-35 154
ENST00000581091 RPL17-012 processed_transcript Homo_sapiens 0 285
ENST00000581373 RPL17-002 protein_coding Homo_sapiens 0 350
ENST00000581741 RPL17-009 retained_intron Homo_sapiens 0 274
ENST00000582588 RPL17-020 retained_intron Homo_sapiens 0 239
ENST00000583036 RPL17-008 protein_coding Homo_sapiens 0 200
ENST00000583637 RPL17-016 protein_coding Homo_sapiens 0 316
ENST00000584364 RPL17-014 retained_intron Homo_sapiens 0 350
ENST00000584895 RPL17-C18orf32-001 protein_coding Homo_sapiens 0 289
ENST00000596405 CTD-2550O8.7-001 processed_pseudogene Homo_sapiens 0 230
ENST00000605218 RPL17P51-001 processed_pseudogene Homo_sapiens 4e-31 137
ENST00000615760 RPL17-024 protein_coding Homo_sapiens 5e-39 165
ENST00000617346 RPL17-022 protein_coding Homo_sapiens 0 289
ENST00000618613 RPL17-202 protein_coding Homo_sapiens 0 350
ENST00000618619 RPL17-023 protein_coding Homo_sapiens 0 350

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