Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	ribosomal protein L3 pseudogene 3
ENST00000467870	RPL3P3-001	ENSG00000243388	9606	+	14:56978409-56979621	processed_pseudogene

Expression Patterns

Transcript ID	Adipose	Adrenal	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Testis
ENST00000467870	0.180±0.00	0.151±0.00	0.049±0.00	0.112±0.00	0.189±0.00	0.041±0.00	0.093±0.00	0.014±0.00	0.185±0.00	0.026±0.00	0.017±0.00	0.082±0.00

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_0007P7	CIL_0007P7_0001	UCNEbase	14:56513836-57292417
CIL_00083W	CIL_00083W_0001	VISTA	14:56553946-57157601
CIL_000869	CIL_000869_0001	VISTA	14:56652290-57254727
CIL_0009BX	CIL_0009BX_0001	VISTA	14:56664169-57265628
CIL_000822	CIL_000822_0001	VISTA	14:56707426-57311372
CIL_0005ZZ	CIL_0005ZZ_0002	CGP	14:56799905-57269008

Gene Ontology
GO ID	Evidence Type	GO Description
No GO terms available.

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENSMUST00000081650	Rpl3-001	protein_coding	Mus_musculus	0	1254
ENSMUST00000120557	Rpl3-ps1-001	processed_pseudogene	Mus_musculus	0	1253
ENSMUST00000117131	Rpl3-ps2-001	processed_pseudogene	Mus_musculus	0	1251
ENSMUST00000089501	Gm5879-201	processed_pseudogene	Mus_musculus	0	1249
ENSMUST00000118069	Gm12816-001	processed_pseudogene	Mus_musculus	0	1188
ENSMUST00000187578	Rpl3-002	retained_intron	Mus_musculus	0	870
ENSMUST00000121389	Gm11662-001	processed_pseudogene	Mus_musculus	0	798
ENSMUST00000188025	Rpl3-007	retained_intron	Mus_musculus	0	747
ENSMUST00000185330	RP23-267J24.4-001	processed_pseudogene	Mus_musculus	0	684
ENSMUST00000185306	Rpl3-003	protein_coding	Mus_musculus	0	556
ENSMUST00000187832	Rpl3-006	nonsense_mediated_decay	Mus_musculus	0	315

Loading