C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 5561
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000178932 Gm5561-201 ENSMUSG00000096474 10090 - 1:179520375-179520857 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverOvaryPlacentaENSMUST00000178932
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Ovary Placenta
ENSMUST00000178932 0.107±0.00 0.118±0.02 0.088±0.01 0.371±0.18 0.180±0.01 0.247±0.00 0.360±0.00 0.129±0.06 0.112±0.00 0.230±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007AO CIL_0007AO_0003 CGP 1:178951960-179546267

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294189 RPL29-001 protein_coding Homo_sapiens 0 361
ENST00000413677 RP4-595K12.1-001 processed_pseudogene Homo_sapiens 0 292
ENST00000440227 RPL29P7-001 processed_pseudogene Homo_sapiens 0 291
ENST00000442089 RP5-1057J7.1-001 processed_pseudogene Homo_sapiens 0 281
ENST00000443998 RP11-632C17__A.1-001 processed_pseudogene Homo_sapiens 0 339
ENST00000446953 RP1-130G2.1-001 processed_pseudogene Homo_sapiens 0 261
ENST00000451924 RP11-42D20.1-001 processed_pseudogene Homo_sapiens 0 322
ENST00000463466 RP11-874G11.1-001 processed_pseudogene Homo_sapiens 0 219
ENST00000465069 RPL29P25-001 processed_pseudogene Homo_sapiens 0 189
ENST00000465434 RPL29P24-001 processed_pseudogene Homo_sapiens 0 268
ENST00000466397 RPL29-005 protein_coding Homo_sapiens 0 361
ENST00000475248 RPL29-008 protein_coding Homo_sapiens 0 361
ENST00000478358 RP11-490G8.1-001 processed_pseudogene Homo_sapiens 0 350
ENST00000479017 RPL29-009 protein_coding Homo_sapiens 0 361
ENST00000480306 RPL29-004 nonsense_mediated_decay Homo_sapiens 7e-38 161
ENST00000481629 RPL29-003 protein_coding Homo_sapiens 7e-39 165
ENST00000482584 RP11-342F17.1-001 processed_pseudogene Homo_sapiens 0 267
ENST00000486188 RPL29P23-001 processed_pseudogene Homo_sapiens 0 207
ENST00000486565 RPL29-002 retained_intron Homo_sapiens 0.0000000004 69
ENST00000486611 RPL29P3-001 processed_pseudogene Homo_sapiens 0 252
ENST00000492277 RPL29-007 protein_coding Homo_sapiens 0 361
ENST00000494408 RPL29P11-001 processed_pseudogene Homo_sapiens 0 339
ENST00000495383 RPL29-006 protein_coding Homo_sapiens 0 361
ENST00000496042 RP11-452G18.1-001 processed_pseudogene Homo_sapiens 0 206

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