| Source ID |
Type |
Tax ID |
Position |
| GBX2 |
UCNEbase |
7955 |
24:35422617-35422772  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007KS_0003 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007KS_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KS_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KS_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000157985' => 'ArfGAP with GTPase domain, ankyrin repeat and PH domain 1',
'ENSG00000207049' => 'Y RNA',
'ENSG00000228499' => 'thymosin beta 10 pseudogene 1',
'ENSG00000238812' => 'RNA, U7 small nuclear 127 pseudogene',
'ENSG00000264676' => 'RNA, 7SL, cytoplasmic 204, pseudogene',
'ENSMUSG00000055013' => 'ArfGAP with GTPase domain, ankyrin repeat and PH domain 1',
'ENSMUSG00000088775' => 'predicted gene, 26037',
'ENSMUSG00000102009' => 'RIKEN cDNA 4933400F21 gene',
'ENSDARG00000062123' => 'ArfGAP with GTPase domain, ankyrin repeat and PH domain 1'
),
'gene_name_arr' => array(
'ENSG00000157985' => 'AGAP1',
'ENSG00000207049' => 'Y_RNA',
'ENSG00000228499' => 'TMSB10P1',
'ENSG00000238812' => 'RNU7-127P',
'ENSG00000264676' => 'RN7SL204P',
'ENSMUSG00000055013' => 'Agap1',
'ENSMUSG00000088775' => 'Gm26037',
'ENSMUSG00000102009' => 'RP23-205B8.2',
'ENSDARG00000062123' => 'agap1'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 20 => 'Bladder',
(int) 29 => 'Brain',
(int) 40 => 'Breast',
(int) 50 => 'Colon',
(int) 60 => 'Heart',
(int) 70 => 'Kidney',
(int) 81 => 'Liver',
(int) 93 => 'Lung',
(int) 104 => 'Muscle',
(int) 114 => 'Ovary',
(int) 127 => 'Placenta',
(int) 136 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 26,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000304032' => array(
'start' => '235494107',
'end' => '236131800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-001'
),
'ENST00000336665' => array(
'start' => '235494107',
'end' => '236126554',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-002'
),
'ENST00000402604' => array(
'start' => '235524324',
'end' => '235744811',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-006'
),
'ENST00000409457' => array(
'start' => '235494089',
'end' => '235853202',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-003'
),
'ENST00000409538' => array(
'start' => '235669604',
'end' => '236126554',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-004'
),
'ENST00000418654' => array(
'start' => '235908842',
'end' => '236120246',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-007'
),
'ENST00000428334' => array(
'start' => '235709178',
'end' => '236131800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-201'
),
'ENST00000448025' => array(
'start' => '235883395',
'end' => '236036697',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-010'
),
'ENST00000453371' => array(
'start' => '236045937',
'end' => '236125482',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'AGAP1-005'
),
'ENST00000466575' => array(
'start' => '236040612',
'end' => '236120279',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AGAP1-008'
),
'ENST00000482882' => array(
'start' => '236040751',
'end' => '236049831',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AGAP1-009'
),
'ENST00000614409' => array(
'start' => '235709177',
'end' => '236131800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-202'
),
'ENST00000619456' => array(
'start' => '235709177',
'end' => '235852853',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-203'
),
'ENST00000384322' => array(
'start' => '236153071',
'end' => '236153172',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-674'
),
'ENST00000415070' => array(
'start' => '235882362',
'end' => '235882493',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'TMSB10P1-001'
),
'ENST00000458845' => array(
'start' => '236037250',
'end' => '236037311',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU7-127P-201'
),
'ENST00000582831' => array(
'start' => '236072295',
'end' => '236072556',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL204P-201'
),
'ENSMUST00000027521' => array(
'start' => '89454806',
'end' => '89897617',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Agap1-001'
),
'ENSMUST00000074945' => array(
'start' => '89580236',
'end' => '89895277',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Agap1-003'
),
'ENSMUST00000185417' => array(
'start' => '89455256',
'end' => '89459706',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Agap1-004'
),
'ENSMUST00000190096' => array(
'start' => '89454874',
'end' => '89890001',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Agap1-002'
),
'ENSMUST00000158150' => array(
'start' => '89684802',
'end' => '89685112',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm26037-201'
),
'ENSMUST00000186098' => array(
'start' => '89650529',
'end' => '89683908',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP23-205B8.2-001'
),
'ENSMUST00000187011' => array(
'start' => '89681085',
'end' => '89683888',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RP23-205B8.2-003'
),
'ENSMUST00000187295' => array(
'start' => '89677487',
'end' => '89683894',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP23-205B8.2-002'
),
'ENSDART00000089445' => array(
'start' => '15964316',
'end' => '16312330',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'agap1-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007KS_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KS_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KS_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007KS_0001' => array(
'genes_in_region' => array(
'ENSG00000157985' => array(
[maximum depth reached]
),
'ENSG00000228499' => array(
[maximum depth reached]
),
'ENSG00000264676' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Bladder',
(int) 14 => 'Breast',
(int) 15 => 'Colon',
(int) 16 => 'Heart',
(int) 17 => 'Liver',
(int) 18 => 'Lung',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Lung',
(int) 22 => 'Breast',
(int) 23 => 'Colon',
(int) 24 => 'Heart',
(int) 25 => 'Lung',
(int) 26 => 'Adipose',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Kidney',
(int) 31 => 'Muscle',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Testis',
(int) 35 => 'Kidney',
(int) 36 => 'Adipose',
(int) 37 => 'Adrenal',
(int) 38 => 'Kidney',
(int) 39 => 'Liver',
(int) 40 => 'Placenta',
(int) 41 => 'Bladder',
(int) 42 => 'Adipose',
(int) 43 => 'Adrenal',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Heart',
(int) 49 => 'Kidney',
(int) 50 => 'Liver',
(int) 51 => 'Muscle',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Testis',
(int) 55 => 'Bladder',
(int) 56 => 'Colon',
(int) 57 => 'Heart',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Adipose',
(int) 63 => 'Adrenal',
(int) 64 => 'Brain',
(int) 65 => 'Ovary',
(int) 66 => 'Adipose',
(int) 67 => 'Adrenal',
(int) 68 => 'Brain',
(int) 69 => 'Breast',
(int) 70 => 'Colon',
(int) 71 => 'Kidney',
(int) 72 => 'Liver',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Ovary',
(int) 76 => 'Testis'
)
),
'CIL_0007KS_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000055013' => array(
[maximum depth reached]
),
'ENSMUSG00000088775' => array(
[maximum depth reached]
),
'ENSMUSG00000102009' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Testis',
(int) 27 => 'Adipose',
(int) 28 => 'Adrenal',
(int) 29 => 'Brain',
(int) 30 => 'Breast',
(int) 31 => 'Colon',
(int) 32 => 'Heart',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Muscle',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Adipose',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Lung',
(int) 44 => 'Ovary',
(int) 45 => 'Testis',
(int) 46 => 'Bladder',
(int) 47 => 'Liver',
(int) 48 => 'Ovary',
(int) 49 => 'Testis',
(int) 50 => 'Adipose',
(int) 51 => 'Adrenal',
(int) 52 => 'Bladder',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Colon',
(int) 56 => 'Heart',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Placenta',
(int) 63 => 'Testis'
)
),
'CIL_0007KS_0004' => array(
'genes_in_region' => array(
'ENSDARG00000062123' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000157985' => 'ArfGAP with GTPase domain, ankyrin repeat and PH domain 1',
'ENSG00000207049' => 'Y RNA',
'ENSG00000228499' => 'thymosin beta 10 pseudogene 1',
'ENSG00000238812' => 'RNA, U7 small nuclear 127 pseudogene',
'ENSG00000264676' => 'RNA, 7SL, cytoplasmic 204, pseudogene',
'ENSMUSG00000055013' => 'ArfGAP with GTPase domain, ankyrin repeat and PH domain 1',
'ENSMUSG00000088775' => 'predicted gene, 26037',
'ENSMUSG00000102009' => 'RIKEN cDNA 4933400F21 gene',
'ENSDARG00000062123' => 'ArfGAP with GTPase domain, ankyrin repeat and PH domain 1'
)
$gene_name_arr = array(
'ENSG00000157985' => 'AGAP1',
'ENSG00000207049' => 'Y_RNA',
'ENSG00000228499' => 'TMSB10P1',
'ENSG00000238812' => 'RNU7-127P',
'ENSG00000264676' => 'RN7SL204P',
'ENSMUSG00000055013' => 'Agap1',
'ENSMUSG00000088775' => 'Gm26037',
'ENSMUSG00000102009' => 'RP23-205B8.2',
'ENSDARG00000062123' => 'agap1'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KS_0001',
'tax_id' => '9606',
'chromosome' => '2',
'seq_start' => '235807704',
'seq_end' => '236163112',
'region_length' => '355408',
'region_type' => 'UCNEbase',
'el_id' => 'GBX2'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KS_0002',
'tax_id' => '10090',
'chromosome' => '1',
'seq_start' => '89671640',
'seq_end' => '89925909',
'region_length' => '254269',
'region_type' => 'UCNEbase',
'el_id' => 'GBX2'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KS_0003',
'tax_id' => '7955',
'chromosome' => '24',
'seq_start' => '35422617',
'seq_end' => '35422772',
'region_length' => '155',
'region_type' => 'UCNEbase',
'el_id' => 'GBX2'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KS_0004',
'tax_id' => '7955',
'chromosome' => '6',
'seq_start' => '15954156',
'seq_end' => '16080201',
'region_length' => '126045',
'region_type' => 'UCNEbase',
'el_id' => 'GBX2'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 20 => 'Bladder',
(int) 29 => 'Brain',
(int) 40 => 'Breast',
(int) 50 => 'Colon',
(int) 60 => 'Heart',
(int) 70 => 'Kidney',
(int) 81 => 'Liver',
(int) 93 => 'Lung',
(int) 104 => 'Muscle',
(int) 114 => 'Ovary',
(int) 127 => 'Placenta',
(int) 136 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 26
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000304032' => array(
'start' => '235494107',
'end' => '236131800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-001'
),
'ENST00000336665' => array(
'start' => '235494107',
'end' => '236126554',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-002'
),
'ENST00000402604' => array(
'start' => '235524324',
'end' => '235744811',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-006'
),
'ENST00000409457' => array(
'start' => '235494089',
'end' => '235853202',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-003'
),
'ENST00000409538' => array(
'start' => '235669604',
'end' => '236126554',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-004'
),
'ENST00000418654' => array(
'start' => '235908842',
'end' => '236120246',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-007'
),
'ENST00000428334' => array(
'start' => '235709178',
'end' => '236131800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-201'
),
'ENST00000448025' => array(
'start' => '235883395',
'end' => '236036697',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-010'
),
'ENST00000453371' => array(
'start' => '236045937',
'end' => '236125482',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'AGAP1-005'
),
'ENST00000466575' => array(
'start' => '236040612',
'end' => '236120279',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AGAP1-008'
),
'ENST00000482882' => array(
'start' => '236040751',
'end' => '236049831',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AGAP1-009'
),
'ENST00000614409' => array(
'start' => '235709177',
'end' => '236131800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-202'
),
'ENST00000619456' => array(
'start' => '235709177',
'end' => '235852853',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-203'
),
'ENST00000384322' => array(
'start' => '236153071',
'end' => '236153172',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-674'
),
'ENST00000415070' => array(
'start' => '235882362',
'end' => '235882493',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'TMSB10P1-001'
),
'ENST00000458845' => array(
'start' => '236037250',
'end' => '236037311',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU7-127P-201'
),
'ENST00000582831' => array(
'start' => '236072295',
'end' => '236072556',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL204P-201'
),
'ENSMUST00000027521' => array(
'start' => '89454806',
'end' => '89897617',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Agap1-001'
),
'ENSMUST00000074945' => array(
'start' => '89580236',
'end' => '89895277',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Agap1-003'
),
'ENSMUST00000185417' => array(
'start' => '89455256',
'end' => '89459706',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Agap1-004'
),
'ENSMUST00000190096' => array(
'start' => '89454874',
'end' => '89890001',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Agap1-002'
),
'ENSMUST00000158150' => array(
'start' => '89684802',
'end' => '89685112',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm26037-201'
),
'ENSMUST00000186098' => array(
'start' => '89650529',
'end' => '89683908',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP23-205B8.2-001'
),
'ENSMUST00000187011' => array(
'start' => '89681085',
'end' => '89683888',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RP23-205B8.2-003'
),
'ENSMUST00000187295' => array(
'start' => '89677487',
'end' => '89683894',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP23-205B8.2-002'
),
'ENSDART00000089445' => array(
'start' => '15964316',
'end' => '16312330',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'agap1-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007KS_0001' => array(
'genes_in_region' => array(
'ENSG00000157985' => array(
[maximum depth reached]
),
'ENSG00000228499' => array(
[maximum depth reached]
),
'ENSG00000264676' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Bladder',
(int) 14 => 'Breast',
(int) 15 => 'Colon',
(int) 16 => 'Heart',
(int) 17 => 'Liver',
(int) 18 => 'Lung',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Lung',
(int) 22 => 'Breast',
(int) 23 => 'Colon',
(int) 24 => 'Heart',
(int) 25 => 'Lung',
(int) 26 => 'Adipose',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Kidney',
(int) 31 => 'Muscle',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Testis',
(int) 35 => 'Kidney',
(int) 36 => 'Adipose',
(int) 37 => 'Adrenal',
(int) 38 => 'Kidney',
(int) 39 => 'Liver',
(int) 40 => 'Placenta',
(int) 41 => 'Bladder',
(int) 42 => 'Adipose',
(int) 43 => 'Adrenal',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Heart',
(int) 49 => 'Kidney',
(int) 50 => 'Liver',
(int) 51 => 'Muscle',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Testis',
(int) 55 => 'Bladder',
(int) 56 => 'Colon',
(int) 57 => 'Heart',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Adipose',
(int) 63 => 'Adrenal',
(int) 64 => 'Brain',
(int) 65 => 'Ovary',
(int) 66 => 'Adipose',
(int) 67 => 'Adrenal',
(int) 68 => 'Brain',
(int) 69 => 'Breast',
(int) 70 => 'Colon',
(int) 71 => 'Kidney',
(int) 72 => 'Liver',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Ovary',
(int) 76 => 'Testis'
)
),
'CIL_0007KS_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000055013' => array(
[maximum depth reached]
),
'ENSMUSG00000088775' => array(
[maximum depth reached]
),
'ENSMUSG00000102009' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Testis',
(int) 27 => 'Adipose',
(int) 28 => 'Adrenal',
(int) 29 => 'Brain',
(int) 30 => 'Breast',
(int) 31 => 'Colon',
(int) 32 => 'Heart',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Muscle',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Adipose',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Lung',
(int) 44 => 'Ovary',
(int) 45 => 'Testis',
(int) 46 => 'Bladder',
(int) 47 => 'Liver',
(int) 48 => 'Ovary',
(int) 49 => 'Testis',
(int) 50 => 'Adipose',
(int) 51 => 'Adrenal',
(int) 52 => 'Bladder',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Colon',
(int) 56 => 'Heart',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Placenta',
(int) 63 => 'Testis'
)
),
'CIL_0007KS_0004' => array(
'genes_in_region' => array(
'ENSDARG00000062123' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KS_0003',
'tax_id' => '7955',
'chromosome' => '24',
'seq_start' => '35422617',
'seq_end' => '35422772',
'region_length' => '155',
'region_type' => 'UCNEbase',
'el_id' => 'GBX2'
)
)
$gene_el = array(
'ENSMUST00000186098' => array(
'Bladder' => array(
'average_FPKM' => '0.020',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.049',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.044',
'stddev_FPKM' => '0.00'
)
),
'ENSMUST00000187011' => array(
'Testis' => array(
'average_FPKM' => '17.244',
'stddev_FPKM' => '0.00'
)
),
'ENSMUST00000187295' => array(
'Adipose' => array(
'average_FPKM' => '0.088',
'stddev_FPKM' => '0.03'
),
'Adrenal' => array(
'average_FPKM' => '0.057',
'stddev_FPKM' => '0.04'
),
'Bladder' => array(
'average_FPKM' => '0.026',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.109',
'stddev_FPKM' => '0.11'
),
'Breast' => array(
'average_FPKM' => '0.077',
'stddev_FPKM' => '0.03'
),
'Colon' => array(
'average_FPKM' => '0.067',
'stddev_FPKM' => '0.02'
),
'Heart' => array(
'average_FPKM' => '0.063',
'stddev_FPKM' => '0.03'
),
'Kidney' => array(
'average_FPKM' => '0.075',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.036',
'stddev_FPKM' => '0.02'
),
'Lung' => array(
'average_FPKM' => '0.271',
'stddev_FPKM' => '0.03'
),
'Muscle' => array(
'average_FPKM' => '0.019',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.052',
'stddev_FPKM' => '0.04'
),
'Placenta' => array(
'average_FPKM' => '0.057',
'stddev_FPKM' => '0.03'
),
'Testis' => array(
'average_FPKM' => '4.764',
'stddev_FPKM' => '2.43'
)
)
)
$gene_key = 'ENSMUSG00000102009'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.088',
'stddev_FPKM' => '0.03'
),
'Adrenal' => array(
'average_FPKM' => '0.057',
'stddev_FPKM' => '0.04'
),
'Bladder' => array(
'average_FPKM' => '0.026',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.109',
'stddev_FPKM' => '0.11'
),
'Breast' => array(
'average_FPKM' => '0.077',
'stddev_FPKM' => '0.03'
),
'Colon' => array(
'average_FPKM' => '0.067',
'stddev_FPKM' => '0.02'
),
'Heart' => array(
'average_FPKM' => '0.063',
'stddev_FPKM' => '0.03'
),
'Kidney' => array(
'average_FPKM' => '0.075',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.036',
'stddev_FPKM' => '0.02'
),
'Lung' => array(
'average_FPKM' => '0.271',
'stddev_FPKM' => '0.03'
),
'Muscle' => array(
'average_FPKM' => '0.019',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.052',
'stddev_FPKM' => '0.04'
),
'Placenta' => array(
'average_FPKM' => '0.057',
'stddev_FPKM' => '0.03'
),
'Testis' => array(
'average_FPKM' => '4.764',
'stddev_FPKM' => '2.43'
)
)
$tran_key = 'ENSMUST00000187295'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007KS_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KS_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KS_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000157985' => 'ArfGAP with GTPase domain, ankyrin repeat and PH domain 1',
'ENSG00000207049' => 'Y RNA',
'ENSG00000228499' => 'thymosin beta 10 pseudogene 1',
'ENSG00000238812' => 'RNA, U7 small nuclear 127 pseudogene',
'ENSG00000264676' => 'RNA, 7SL, cytoplasmic 204, pseudogene',
'ENSMUSG00000055013' => 'ArfGAP with GTPase domain, ankyrin repeat and PH domain 1',
'ENSMUSG00000088775' => 'predicted gene, 26037',
'ENSMUSG00000102009' => 'RIKEN cDNA 4933400F21 gene',
'ENSDARG00000062123' => 'ArfGAP with GTPase domain, ankyrin repeat and PH domain 1'
),
'gene_name_arr' => array(
'ENSG00000157985' => 'AGAP1',
'ENSG00000207049' => 'Y_RNA',
'ENSG00000228499' => 'TMSB10P1',
'ENSG00000238812' => 'RNU7-127P',
'ENSG00000264676' => 'RN7SL204P',
'ENSMUSG00000055013' => 'Agap1',
'ENSMUSG00000088775' => 'Gm26037',
'ENSMUSG00000102009' => 'RP23-205B8.2',
'ENSDARG00000062123' => 'agap1'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 20 => 'Bladder',
(int) 29 => 'Brain',
(int) 40 => 'Breast',
(int) 50 => 'Colon',
(int) 60 => 'Heart',
(int) 70 => 'Kidney',
(int) 81 => 'Liver',
(int) 93 => 'Lung',
(int) 104 => 'Muscle',
(int) 114 => 'Ovary',
(int) 127 => 'Placenta',
(int) 136 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 26,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000304032' => array(
'start' => '235494107',
'end' => '236131800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-001'
),
'ENST00000336665' => array(
'start' => '235494107',
'end' => '236126554',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-002'
),
'ENST00000402604' => array(
'start' => '235524324',
'end' => '235744811',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-006'
),
'ENST00000409457' => array(
'start' => '235494089',
'end' => '235853202',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-003'
),
'ENST00000409538' => array(
'start' => '235669604',
'end' => '236126554',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-004'
),
'ENST00000418654' => array(
'start' => '235908842',
'end' => '236120246',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-007'
),
'ENST00000428334' => array(
'start' => '235709178',
'end' => '236131800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-201'
),
'ENST00000448025' => array(
'start' => '235883395',
'end' => '236036697',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-010'
),
'ENST00000453371' => array(
'start' => '236045937',
'end' => '236125482',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'AGAP1-005'
),
'ENST00000466575' => array(
'start' => '236040612',
'end' => '236120279',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AGAP1-008'
),
'ENST00000482882' => array(
'start' => '236040751',
'end' => '236049831',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AGAP1-009'
),
'ENST00000614409' => array(
'start' => '235709177',
'end' => '236131800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-202'
),
'ENST00000619456' => array(
'start' => '235709177',
'end' => '235852853',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-203'
),
'ENST00000384322' => array(
'start' => '236153071',
'end' => '236153172',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-674'
),
'ENST00000415070' => array(
'start' => '235882362',
'end' => '235882493',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'TMSB10P1-001'
),
'ENST00000458845' => array(
'start' => '236037250',
'end' => '236037311',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU7-127P-201'
),
'ENST00000582831' => array(
'start' => '236072295',
'end' => '236072556',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL204P-201'
),
'ENSMUST00000027521' => array(
'start' => '89454806',
'end' => '89897617',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Agap1-001'
),
'ENSMUST00000074945' => array(
'start' => '89580236',
'end' => '89895277',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Agap1-003'
),
'ENSMUST00000185417' => array(
'start' => '89455256',
'end' => '89459706',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Agap1-004'
),
'ENSMUST00000190096' => array(
'start' => '89454874',
'end' => '89890001',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Agap1-002'
),
'ENSMUST00000158150' => array(
'start' => '89684802',
'end' => '89685112',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm26037-201'
),
'ENSMUST00000186098' => array(
'start' => '89650529',
'end' => '89683908',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP23-205B8.2-001'
),
'ENSMUST00000187011' => array(
'start' => '89681085',
'end' => '89683888',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RP23-205B8.2-003'
),
'ENSMUST00000187295' => array(
'start' => '89677487',
'end' => '89683894',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP23-205B8.2-002'
),
'ENSDART00000089445' => array(
'start' => '15964316',
'end' => '16312330',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'agap1-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007KS_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KS_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KS_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007KS_0001' => array(
'genes_in_region' => array(
'ENSG00000157985' => array(
[maximum depth reached]
),
'ENSG00000228499' => array(
[maximum depth reached]
),
'ENSG00000264676' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Bladder',
(int) 14 => 'Breast',
(int) 15 => 'Colon',
(int) 16 => 'Heart',
(int) 17 => 'Liver',
(int) 18 => 'Lung',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Lung',
(int) 22 => 'Breast',
(int) 23 => 'Colon',
(int) 24 => 'Heart',
(int) 25 => 'Lung',
(int) 26 => 'Adipose',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Kidney',
(int) 31 => 'Muscle',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Testis',
(int) 35 => 'Kidney',
(int) 36 => 'Adipose',
(int) 37 => 'Adrenal',
(int) 38 => 'Kidney',
(int) 39 => 'Liver',
(int) 40 => 'Placenta',
(int) 41 => 'Bladder',
(int) 42 => 'Adipose',
(int) 43 => 'Adrenal',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Heart',
(int) 49 => 'Kidney',
(int) 50 => 'Liver',
(int) 51 => 'Muscle',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Testis',
(int) 55 => 'Bladder',
(int) 56 => 'Colon',
(int) 57 => 'Heart',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Adipose',
(int) 63 => 'Adrenal',
(int) 64 => 'Brain',
(int) 65 => 'Ovary',
(int) 66 => 'Adipose',
(int) 67 => 'Adrenal',
(int) 68 => 'Brain',
(int) 69 => 'Breast',
(int) 70 => 'Colon',
(int) 71 => 'Kidney',
(int) 72 => 'Liver',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Ovary',
(int) 76 => 'Testis'
)
),
'CIL_0007KS_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000055013' => array(
[maximum depth reached]
),
'ENSMUSG00000088775' => array(
[maximum depth reached]
),
'ENSMUSG00000102009' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Testis',
(int) 27 => 'Adipose',
(int) 28 => 'Adrenal',
(int) 29 => 'Brain',
(int) 30 => 'Breast',
(int) 31 => 'Colon',
(int) 32 => 'Heart',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Muscle',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Adipose',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Lung',
(int) 44 => 'Ovary',
(int) 45 => 'Testis',
(int) 46 => 'Bladder',
(int) 47 => 'Liver',
(int) 48 => 'Ovary',
(int) 49 => 'Testis',
(int) 50 => 'Adipose',
(int) 51 => 'Adrenal',
(int) 52 => 'Bladder',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Colon',
(int) 56 => 'Heart',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Placenta',
(int) 63 => 'Testis'
)
),
'CIL_0007KS_0004' => array(
'genes_in_region' => array(
'ENSDARG00000062123' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000157985' => 'ArfGAP with GTPase domain, ankyrin repeat and PH domain 1',
'ENSG00000207049' => 'Y RNA',
'ENSG00000228499' => 'thymosin beta 10 pseudogene 1',
'ENSG00000238812' => 'RNA, U7 small nuclear 127 pseudogene',
'ENSG00000264676' => 'RNA, 7SL, cytoplasmic 204, pseudogene',
'ENSMUSG00000055013' => 'ArfGAP with GTPase domain, ankyrin repeat and PH domain 1',
'ENSMUSG00000088775' => 'predicted gene, 26037',
'ENSMUSG00000102009' => 'RIKEN cDNA 4933400F21 gene',
'ENSDARG00000062123' => 'ArfGAP with GTPase domain, ankyrin repeat and PH domain 1'
)
$gene_name_arr = array(
'ENSG00000157985' => 'AGAP1',
'ENSG00000207049' => 'Y_RNA',
'ENSG00000228499' => 'TMSB10P1',
'ENSG00000238812' => 'RNU7-127P',
'ENSG00000264676' => 'RN7SL204P',
'ENSMUSG00000055013' => 'Agap1',
'ENSMUSG00000088775' => 'Gm26037',
'ENSMUSG00000102009' => 'RP23-205B8.2',
'ENSDARG00000062123' => 'agap1'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KS_0001',
'tax_id' => '9606',
'chromosome' => '2',
'seq_start' => '235807704',
'seq_end' => '236163112',
'region_length' => '355408',
'region_type' => 'UCNEbase',
'el_id' => 'GBX2'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KS_0002',
'tax_id' => '10090',
'chromosome' => '1',
'seq_start' => '89671640',
'seq_end' => '89925909',
'region_length' => '254269',
'region_type' => 'UCNEbase',
'el_id' => 'GBX2'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KS_0003',
'tax_id' => '7955',
'chromosome' => '24',
'seq_start' => '35422617',
'seq_end' => '35422772',
'region_length' => '155',
'region_type' => 'UCNEbase',
'el_id' => 'GBX2'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KS_0004',
'tax_id' => '7955',
'chromosome' => '6',
'seq_start' => '15954156',
'seq_end' => '16080201',
'region_length' => '126045',
'region_type' => 'UCNEbase',
'el_id' => 'GBX2'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 20 => 'Bladder',
(int) 29 => 'Brain',
(int) 40 => 'Breast',
(int) 50 => 'Colon',
(int) 60 => 'Heart',
(int) 70 => 'Kidney',
(int) 81 => 'Liver',
(int) 93 => 'Lung',
(int) 104 => 'Muscle',
(int) 114 => 'Ovary',
(int) 127 => 'Placenta',
(int) 136 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 26
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000304032' => array(
'start' => '235494107',
'end' => '236131800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-001'
),
'ENST00000336665' => array(
'start' => '235494107',
'end' => '236126554',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-002'
),
'ENST00000402604' => array(
'start' => '235524324',
'end' => '235744811',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-006'
),
'ENST00000409457' => array(
'start' => '235494089',
'end' => '235853202',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-003'
),
'ENST00000409538' => array(
'start' => '235669604',
'end' => '236126554',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-004'
),
'ENST00000418654' => array(
'start' => '235908842',
'end' => '236120246',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-007'
),
'ENST00000428334' => array(
'start' => '235709178',
'end' => '236131800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-201'
),
'ENST00000448025' => array(
'start' => '235883395',
'end' => '236036697',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-010'
),
'ENST00000453371' => array(
'start' => '236045937',
'end' => '236125482',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'AGAP1-005'
),
'ENST00000466575' => array(
'start' => '236040612',
'end' => '236120279',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AGAP1-008'
),
'ENST00000482882' => array(
'start' => '236040751',
'end' => '236049831',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AGAP1-009'
),
'ENST00000614409' => array(
'start' => '235709177',
'end' => '236131800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-202'
),
'ENST00000619456' => array(
'start' => '235709177',
'end' => '235852853',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AGAP1-203'
),
'ENST00000384322' => array(
'start' => '236153071',
'end' => '236153172',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-674'
),
'ENST00000415070' => array(
'start' => '235882362',
'end' => '235882493',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'TMSB10P1-001'
),
'ENST00000458845' => array(
'start' => '236037250',
'end' => '236037311',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU7-127P-201'
),
'ENST00000582831' => array(
'start' => '236072295',
'end' => '236072556',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL204P-201'
),
'ENSMUST00000027521' => array(
'start' => '89454806',
'end' => '89897617',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Agap1-001'
),
'ENSMUST00000074945' => array(
'start' => '89580236',
'end' => '89895277',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Agap1-003'
),
'ENSMUST00000185417' => array(
'start' => '89455256',
'end' => '89459706',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Agap1-004'
),
'ENSMUST00000190096' => array(
'start' => '89454874',
'end' => '89890001',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Agap1-002'
),
'ENSMUST00000158150' => array(
'start' => '89684802',
'end' => '89685112',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm26037-201'
),
'ENSMUST00000186098' => array(
'start' => '89650529',
'end' => '89683908',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP23-205B8.2-001'
),
'ENSMUST00000187011' => array(
'start' => '89681085',
'end' => '89683888',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RP23-205B8.2-003'
),
'ENSMUST00000187295' => array(
'start' => '89677487',
'end' => '89683894',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP23-205B8.2-002'
),
'ENSDART00000089445' => array(
'start' => '15964316',
'end' => '16312330',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'agap1-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007KS_0001' => array(
'genes_in_region' => array(
'ENSG00000157985' => array(
[maximum depth reached]
),
'ENSG00000228499' => array(
[maximum depth reached]
),
'ENSG00000264676' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Bladder',
(int) 14 => 'Breast',
(int) 15 => 'Colon',
(int) 16 => 'Heart',
(int) 17 => 'Liver',
(int) 18 => 'Lung',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Lung',
(int) 22 => 'Breast',
(int) 23 => 'Colon',
(int) 24 => 'Heart',
(int) 25 => 'Lung',
(int) 26 => 'Adipose',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Kidney',
(int) 31 => 'Muscle',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Testis',
(int) 35 => 'Kidney',
(int) 36 => 'Adipose',
(int) 37 => 'Adrenal',
(int) 38 => 'Kidney',
(int) 39 => 'Liver',
(int) 40 => 'Placenta',
(int) 41 => 'Bladder',
(int) 42 => 'Adipose',
(int) 43 => 'Adrenal',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Heart',
(int) 49 => 'Kidney',
(int) 50 => 'Liver',
(int) 51 => 'Muscle',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Testis',
(int) 55 => 'Bladder',
(int) 56 => 'Colon',
(int) 57 => 'Heart',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Adipose',
(int) 63 => 'Adrenal',
(int) 64 => 'Brain',
(int) 65 => 'Ovary',
(int) 66 => 'Adipose',
(int) 67 => 'Adrenal',
(int) 68 => 'Brain',
(int) 69 => 'Breast',
(int) 70 => 'Colon',
(int) 71 => 'Kidney',
(int) 72 => 'Liver',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Ovary',
(int) 76 => 'Testis'
)
),
'CIL_0007KS_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000055013' => array(
[maximum depth reached]
),
'ENSMUSG00000088775' => array(
[maximum depth reached]
),
'ENSMUSG00000102009' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Testis',
(int) 27 => 'Adipose',
(int) 28 => 'Adrenal',
(int) 29 => 'Brain',
(int) 30 => 'Breast',
(int) 31 => 'Colon',
(int) 32 => 'Heart',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Muscle',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Adipose',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Lung',
(int) 44 => 'Ovary',
(int) 45 => 'Testis',
(int) 46 => 'Bladder',
(int) 47 => 'Liver',
(int) 48 => 'Ovary',
(int) 49 => 'Testis',
(int) 50 => 'Adipose',
(int) 51 => 'Adrenal',
(int) 52 => 'Bladder',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Colon',
(int) 56 => 'Heart',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Placenta',
(int) 63 => 'Testis'
)
),
'CIL_0007KS_0004' => array(
'genes_in_region' => array(
'ENSDARG00000062123' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KS_0003',
'tax_id' => '7955',
'chromosome' => '24',
'seq_start' => '35422617',
'seq_end' => '35422772',
'region_length' => '155',
'region_type' => 'UCNEbase',
'el_id' => 'GBX2'
)
)
$gene_el = array(
'ENSMUST00000186098' => array(
'Bladder' => array(
'average_FPKM' => '0.020',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.049',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.044',
'stddev_FPKM' => '0.00'
)
),
'ENSMUST00000187011' => array(
'Testis' => array(
'average_FPKM' => '17.244',
'stddev_FPKM' => '0.00'
)
),
'ENSMUST00000187295' => array(
'Adipose' => array(
'average_FPKM' => '0.088',
'stddev_FPKM' => '0.03'
),
'Adrenal' => array(
'average_FPKM' => '0.057',
'stddev_FPKM' => '0.04'
),
'Bladder' => array(
'average_FPKM' => '0.026',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.109',
'stddev_FPKM' => '0.11'
),
'Breast' => array(
'average_FPKM' => '0.077',
'stddev_FPKM' => '0.03'
),
'Colon' => array(
'average_FPKM' => '0.067',
'stddev_FPKM' => '0.02'
),
'Heart' => array(
'average_FPKM' => '0.063',
'stddev_FPKM' => '0.03'
),
'Kidney' => array(
'average_FPKM' => '0.075',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.036',
'stddev_FPKM' => '0.02'
),
'Lung' => array(
'average_FPKM' => '0.271',
'stddev_FPKM' => '0.03'
),
'Muscle' => array(
'average_FPKM' => '0.019',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.052',
'stddev_FPKM' => '0.04'
),
'Placenta' => array(
'average_FPKM' => '0.057',
'stddev_FPKM' => '0.03'
),
'Testis' => array(
'average_FPKM' => '4.764',
'stddev_FPKM' => '2.43'
)
)
)
$gene_key = 'ENSMUSG00000102009'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.088',
'stddev_FPKM' => '0.03'
),
'Adrenal' => array(
'average_FPKM' => '0.057',
'stddev_FPKM' => '0.04'
),
'Bladder' => array(
'average_FPKM' => '0.026',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.109',
'stddev_FPKM' => '0.11'
),
'Breast' => array(
'average_FPKM' => '0.077',
'stddev_FPKM' => '0.03'
),
'Colon' => array(
'average_FPKM' => '0.067',
'stddev_FPKM' => '0.02'
),
'Heart' => array(
'average_FPKM' => '0.063',
'stddev_FPKM' => '0.03'
),
'Kidney' => array(
'average_FPKM' => '0.075',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.036',
'stddev_FPKM' => '0.02'
),
'Lung' => array(
'average_FPKM' => '0.271',
'stddev_FPKM' => '0.03'
),
'Muscle' => array(
'average_FPKM' => '0.019',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.052',
'stddev_FPKM' => '0.04'
),
'Placenta' => array(
'average_FPKM' => '0.057',
'stddev_FPKM' => '0.03'
),
'Testis' => array(
'average_FPKM' => '4.764',
'stddev_FPKM' => '2.43'
)
)
$tran_key = 'ENSMUST00000187295'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(AGAP1)