C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12684
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118675 Gm12684-001 ENSMUSG00000081150 10090 - 4:99430256-99431254 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000118675
Transcript ID Adipose Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000118675 0.039±0.00 0.029±0.00 0.073±0.00 0.070±0.00 0.029±0.00 0.067±0.01 0.050±0.00 0.194±0.19 0.130±0.00 0.982±0.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008H9 CIL_0008H9_0002 VISTA 4:98994411-99595982
CIL_00085L CIL_00085L_0002 VISTA 4:99053164-99654624
CIL_00089A CIL_00089A_0002 VISTA 4:99074142-99675600
CIL_0007KW CIL_0007KW_0002 UCNEbase 4:99267882-99771733
CIL_0008AH CIL_0008AH_0002 VISTA 4:99273882-99874766

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 963
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 765
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 961
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 963
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 963
ENST00000398586 GAPDHP15-001 processed_pseudogene Homo_sapiens 0 505
ENST00000402643 GAPDHP72-001 processed_pseudogene Homo_sapiens 0 761
ENST00000403475 RP11-378G13.2-001 processed_pseudogene Homo_sapiens 0 695
ENST00000405405 GAPDHP63-001 processed_pseudogene Homo_sapiens 0 821
ENST00000423411 GAPDHP73-001 processed_pseudogene Homo_sapiens 0 708
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 865
ENST00000426454 GAPDHP51-001 processed_pseudogene Homo_sapiens 0 599
ENST00000432206 GAPDHP2-001 processed_pseudogene Homo_sapiens 0 656
ENST00000436626 GAPDHP48-001 processed_pseudogene Homo_sapiens 0 497
ENST00000436818 GAPDHP26-001 processed_pseudogene Homo_sapiens 0 584
ENST00000442317 GAPDHP37-001 processed_pseudogene Homo_sapiens 0 556
ENST00000447061 GAPDHP25-001 processed_pseudogene Homo_sapiens 0 691
ENST00000447427 GAPDHP27-001 processed_pseudogene Homo_sapiens 0 420
ENST00000449411 GAPDHP74-001 processed_pseudogene Homo_sapiens 2e-28 130
ENST00000452570 GAPDHP1-001 processed_pseudogene Homo_sapiens 0 905
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 1e-24 119
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 765
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 765
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 636
ENST00000505218 GAPDHP40-001 processed_pseudogene Homo_sapiens 0 689
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 782
ENST00000513846 GAPDHP60-001 processed_pseudogene Homo_sapiens 0 734
ENST00000513953 RP11-44N17.1-001 processed_pseudogene Homo_sapiens 0 488
ENST00000515281 GAPDHP70-001 processed_pseudogene Homo_sapiens 0 593
ENST00000515313 GAPDHP62-001 processed_pseudogene Homo_sapiens 0 651
ENST00000520713 ANKRD46-009 processed_transcript Homo_sapiens 0 566
ENST00000524319 ANKRD46-003 processed_transcript Homo_sapiens 0 566
ENST00000613707 RP11-343D24.1-001 processed_pseudogene Homo_sapiens 0 512
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 874

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