C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: acid-sensing (proton-gated) ion channel 1a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000004588 asic1a-001 ENSDARG00000008329 7955 + 8:7536757-7592845 protein_coding

Danio rerio EnsemblZv9

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLiverMuscleENSDART00000004588
Transcript ID Heart Kidney Liver Muscle
ENSDART00000004588 2.269±0.09 0.770±0.00 0.523±0.00 2.003±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005261 IGI cation channel activity
GO:0005272 IEA sodium channel activity
GO:0005886 IEA plasma membrane
GO:0005887 IDA integral to plasma membrane
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0006812 IGI cation transport
GO:0006814 IEA sodium ion transport
GO:0015280 IEA ligand-gated sodium channel activity
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0034220 IGI ion transmembrane transport
GO:0035725 IDA sodium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023758 Asic1-201 protein_coding Mus_musculus 0 494
ENST00000225823 ASIC2-001 protein_coding Homo_sapiens 0 279
ENST00000228468 ASIC1-001 protein_coding Homo_sapiens 0 473
ENST00000359872 ASIC2-003 protein_coding Homo_sapiens 0 279
ENST00000447966 ASIC1-002 protein_coding Homo_sapiens 0 521
ENST00000448983 ASIC2-002 processed_transcript Homo_sapiens 0 231
ENST00000453327 ASIC1-007 protein_coding Homo_sapiens 0 446
ENST00000548350 ASIC1-006 retained_intron Homo_sapiens 3e-21 106
ENST00000550558 ASIC1-003 nonsense_mediated_decay Homo_sapiens 0 446
ENST00000551199 ASIC1-004 retained_intron Homo_sapiens 0 370
ENST00000552438 ASIC1-009 protein_coding Homo_sapiens 0 449
ENST00000579816 ASIC2-004 processed_transcript Homo_sapiens 0.000000001 68

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