C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000012644 krt4-001 ENSDARG00000017624 7955 - 6:39239362-39243891 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000012644
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000012644 6.150±4.34 76.013±29.35 36.456±40.67 1.347±0.00 25.542±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033Q CIL_00033Q_0001 CGP 6:39239362-39275123

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005882 IEA intermediate filament
GO:0045095 IEA keratin filament

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028062 Vim-001 protein_coding Mus_musculus 0.000000000000004 88
ENSMUST00000068904 Krt7-001 protein_coding Mus_musculus 0 324
ENSMUST00000131069 Krt7-002 retained_intron Mus_musculus 5e-26 124
ENSMUST00000147662 Krt7-003 protein_coding Mus_musculus 9.99995e-41 171
ENSMUST00000148248 Vim-004 retained_intron Mus_musculus 9e-16 88
ENST00000330553 KRT79-001 protein_coding Homo_sapiens 1.4013e-45 189
ENST00000396270 KRT8P39-001 processed_pseudogene Homo_sapiens 0 311
ENST00000509735 KRT8P4-001 processed_pseudogene Homo_sapiens 2e-32 145
ENST00000512863 KRT8P32-001 processed_pseudogene Homo_sapiens 0 359
ENST00000557533 KRT8P1-001 processed_pseudogene Homo_sapiens 0 226
ENST00000560290 KRT8P24-001 processed_pseudogene Homo_sapiens 0 287
ENST00000577607 KRT8P34-001 processed_pseudogene Homo_sapiens 1e-37 161
ENST00000592443 KRT8P5-001 processed_pseudogene Homo_sapiens 0 222
ENST00000604727 KRT8P47-001 processed_pseudogene Homo_sapiens 0 276

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