C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, AMPA 1a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000021437 gria1a-001 ENSDARG00000021352 7955 - 14:35219246-35365048 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000021437
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000021437 5.300±4.62 0.246±0.10 0.155±0.00 0.024±0.00 0.478±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004970 IEA ionotropic glutamate receptor activity
GO:0005215 IEA transporter activity
GO:0005234 IEA extracellular-glutamate-gated ion channel activity
GO:0005886 IEA plasma membrane
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0030054 IEA cell junction
GO:0045202 IEA synapse
GO:0045211 IEA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027020 Gria4-201 protein_coding Mus_musculus 0 549
ENSMUST00000063508 Gria4-202 protein_coding Mus_musculus 0 292
ENSMUST00000075316 Gria2-201 protein_coding Mus_musculus 0 640
ENSMUST00000094179 Gria1-005 protein_coding Mus_musculus 0 676
ENSMUST00000115103 Gria3-004 protein_coding Mus_musculus 0 568
ENSMUST00000139965 Gria3-002 nonsense_mediated_decay Mus_musculus 0 475
ENSMUST00000156721 Gria3-003 retained_intron Mus_musculus 0 244
ENSMUST00000165288 Gria3-201 protein_coding Mus_musculus 0 568
ENST00000264426 GRIA2-002 protein_coding Homo_sapiens 0 573
ENST00000285900 GRIA1-001 protein_coding Homo_sapiens 0 713
ENST00000323661 GRIA2-006 nonsense_mediated_decay Homo_sapiens 3e-37 161
ENST00000393127 GRIA4-202 protein_coding Homo_sapiens 0 540
ENST00000503980 GRIA2-013 retained_intron Homo_sapiens 0 241
ENST00000518142 GRIA1-013 protein_coding Homo_sapiens 0 713
ENST00000518783 GRIA1-007 protein_coding Homo_sapiens 0 713
ENST00000521843 GRIA1-010 protein_coding Homo_sapiens 0 713
ENST00000525187 GRIA4-006 protein_coding Homo_sapiens 0 540
ENST00000525942 GRIA4-007 nonsense_mediated_decay Homo_sapiens 0 239
ENST00000533094 GRIA4-008 processed_transcript Homo_sapiens 0 244
ENST00000541091 GRIA3-002 protein_coding Homo_sapiens 0 525
ENST00000620443 GRIA3-001 protein_coding Homo_sapiens 0 298
ENST00000620581 GRIA3-201 protein_coding Homo_sapiens 0 433
ENST00000622768 GRIA3-202 protein_coding Homo_sapiens 0 525

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