C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, AMPA 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000541091 GRIA3-002 ENSG00000125675 9606 + X:123184483-123483046 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverOvaryPlacentaTestisENST00000541091
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Ovary Placenta Testis
ENST00000541091 0.020±0.00 0.145±0.00 0.229±0.00 4.035±0.00 0.110±0.00 0.246±0.16 0.046±0.00 0.265±0.01 0.245±0.23 1.192±0.00 0.523±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001U7 CIL_0001U7_0001 CGP X:123184153-123733056

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004970 IEA ionotropic glutamate receptor activity
GO:0004971 IDA alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity
GO:0005234 IBA:IEA extracellular-glutamate-gated ion channel activity
GO:0005886 TAS plasma membrane
GO:0006810 TAS transport
GO:0007215 TAS glutamate receptor signaling pathway
GO:0007268 TAS synaptic transmission
GO:0016020 IEA membrane
GO:0030054 IEA cell junction
GO:0030425 IBA dendrite
GO:0030666 TAS endocytic vesicle membrane
GO:0032281 ISS alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0034220 IEA ion transmembrane transport
GO:0035235 IEA ionotropic glutamate receptor signaling pathway
GO:0035249 IBA synaptic transmission, glutamatergic
GO:0045211 IBA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115103 Gria3-004 protein_coding Mus_musculus 0 4263
ENSMUST00000165288 Gria3-201 protein_coding Mus_musculus 0 4200
ENSMUST00000076349 Gria3-001 protein_coding Mus_musculus 0 4152
ENSMUST00000139965 Gria3-002 nonsense_mediated_decay Mus_musculus 0 3888
ENSMUST00000156721 Gria3-003 retained_intron Mus_musculus 0 3675
ENSMUST00000148212 Gria3-006 retained_intron Mus_musculus 0 2994
ENSMUST00000128197 Gria3-005 retained_intron Mus_musculus 0 2939
ENSDART00000043180 gria3b-001 protein_coding Danio_rerio 0 1871
ENSMUST00000027020 Gria4-201 protein_coding Mus_musculus 0 1109
ENSMUST00000075316 Gria2-201 protein_coding Mus_musculus 0 950
ENSDART00000074671 gria2b-002 protein_coding Danio_rerio 0 887
ENSMUST00000107745 Gria2-202 protein_coding Mus_musculus 0 822
ENSMUST00000094179 Gria1-005 protein_coding Mus_musculus 0 752
ENSDART00000102782 gria2a-001 protein_coding Danio_rerio 0 645
ENSMUST00000151045 Gria1-006 protein_coding Mus_musculus 0 636
ENSMUST00000036315 Gria1-004 protein_coding Mus_musculus 0 636
ENSDART00000044735 gria1b-001 protein_coding Danio_rerio 0 577
ENSDART00000021437 gria1a-001 protein_coding Danio_rerio 0 525
ENSMUST00000126843 Gria3-008 retained_intron Mus_musculus 0 444
ENSMUST00000124169 Gria3-007 protein_coding Mus_musculus 0 412

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