C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, AMPA4 (alpha 4)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000063508 Gria4-202 ENSMUSG00000025892 10090 - 9:4417899-4796234 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000063508
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000063508 0.694±0.91 0.104±0.09 1.961±0.08 3.738±1.85 0.155±0.17 0.169±0.00 0.014±0.01 0.595±0.21 0.027±0.03 0.011±0.00 0.015±0.01 0.054±0.04 0.090±0.07 0.357±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000YT CIL_0000YT_0002 CGP 9:4383535-4796234

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004970 ISS ionotropic glutamate receptor activity
GO:0004971 ISS alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity
GO:0005234 IBA extracellular-glutamate-gated ion channel activity
GO:0005515 IPI protein binding
GO:0030054 IEA cell junction
GO:0030425 IBA dendrite
GO:0032281 IDA alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0032983 ISS kainate selective glutamate receptor complex
GO:0034220 IBA ion transmembrane transport
GO:0035235 IBA ionotropic glutamate receptor signaling pathway
GO:0035249 IBA synaptic transmission, glutamatergic
GO:0045202 IDA synapse
GO:0045211 IBA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000064617 gria2b-001 protein_coding Danio_rerio 0 887
ENSDART00000049291 gria3a-001 protein_coding Danio_rerio 0 885
ENSDART00000123713 gria1b-003 protein_coding Danio_rerio 0 540
ENSDART00000077805 gria2a-002 protein_coding Danio_rerio 0 464
ENSDART00000021437 gria1a-001 protein_coding Danio_rerio 0 292
ENSDART00000134602 gria2b-003 processed_transcript Danio_rerio 0 274
ENST00000282499 GRIA4-201 protein_coding Homo_sapiens 0 4569
ENST00000296526 GRIA2-001 protein_coding Homo_sapiens 0 1048
ENST00000323661 GRIA2-006 nonsense_mediated_decay Homo_sapiens 8.00141e-43 180
ENST00000393125 GRIA4-001 protein_coding Homo_sapiens 0 1779
ENST00000393127 GRIA4-202 protein_coding Homo_sapiens 0 3563
ENST00000393815 GRIA2-004 protein_coding Homo_sapiens 0 1048
ENST00000428631 GRIA4-004 protein_coding Homo_sapiens 0 1762
ENST00000471736 GRIA2-003 retained_intron Homo_sapiens 0 1027
ENST00000507898 GRIA2-005 protein_coding Homo_sapiens 0 1048
ENST00000510854 GRIA2-012 protein_coding Homo_sapiens 0 477
ENST00000525032 GRIA4-002 retained_intron Homo_sapiens 0 985
ENST00000525187 GRIA4-006 protein_coding Homo_sapiens 0 3441
ENST00000525921 GRIA4-011 protein_coding Homo_sapiens 0 431
ENST00000525942 GRIA4-007 nonsense_mediated_decay Homo_sapiens 0 427
ENST00000527177 GRIA4-009 protein_coding Homo_sapiens 0 468
ENST00000527669 GRIA4-003 protein_coding Homo_sapiens 0 481
ENST00000527687 GRIA4-012 processed_transcript Homo_sapiens 0 725
ENST00000530497 GRIA4-005 protein_coding Homo_sapiens 0 4447
ENST00000531011 GRIA4-013 protein_coding Homo_sapiens 0 741
ENST00000531986 GRIA4-010 protein_coding Homo_sapiens 0 431
ENST00000533094 GRIA4-008 processed_transcript Homo_sapiens 0 505
ENST00000620443 GRIA3-001 protein_coding Homo_sapiens 0 1070
ENST00000620581 GRIA3-201 protein_coding Homo_sapiens 0 252

Loading