C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: secreted acidic cysteine rich glycoprotein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108858 Sparc-002 ENSMUSG00000018593 10090 - 11:55394500-55419898 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000108858
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108858 1075.515±780.70 666.536±208.81 680.218±196.01 34.089±7.82 464.497±120.68 136.978±12.82 98.480±54.36 93.700±45.70 39.419±10.80 635.202±33.23 36.132±8.73 372.586±119.01 445.365±185.15 81.862±46.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00025X CIL_00025X_0002 CGP 11:55250609-55420080
CIL_0007IC CIL_0007IC_0003 CGP 11:55394500-55461239

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 IEA extracellular space
GO:0007165 IEA signal transduction
GO:0031012 IDA extracellular matrix
GO:0042127 IGI regulation of cell proliferation
GO:0050840 IDA extracellular matrix binding
GO:0060348 IMP bone development
GO:0071363 IDA cellular response to growth factor stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000039660 sparc-001 protein_coding Danio_rerio 0 619
ENSDART00000135627 sparc-002 protein_coding Danio_rerio 0 496
ENSDART00000141304 sparc-004 protein_coding Danio_rerio 0 267
ENSDART00000142572 sparc-005 retained_intron Danio_rerio 0 237
ENST00000231061 SPARC-001 protein_coding Homo_sapiens 0 1293
ENST00000520687 SPARC-002 retained_intron Homo_sapiens 0 680
ENST00000521327 SPARC-003 retained_intron Homo_sapiens 0 244
ENST00000521569 SPARC-005 protein_coding Homo_sapiens 0 678
ENST00000522348 SPARC-004 protein_coding Homo_sapiens 1e-34 150
ENST00000524277 SPARC-006 retained_intron Homo_sapiens 0 525
ENST00000537849 SPARC-009 processed_transcript Homo_sapiens 0 211
ENST00000538026 SPARC-008 protein_coding Homo_sapiens 0 736
ENST00000539687 SPARC-007 protein_coding Homo_sapiens 0 375
ENST00000620972 SPARC-201 protein_coding Homo_sapiens 0 1253

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