C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L30
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000052082 rpl30-001 ENSDARG00000035871 7955 + 19:34230603-34236244 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000052082
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000052082 116.319±81.55 1099.294±690.43 1027.696±481.99 498.275±0.00 556.865±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0030529 IEA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000009039 Rpl30-002 protein_coding Mus_musculus 0 296
ENSMUST00000079735 Rpl30-001 protein_coding Mus_musculus 0 296
ENSMUST00000118307 Gm12191-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000118664 Gm7429-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000119767 Rpl30-ps1-001 processed_pseudogene Mus_musculus 0 294
ENSMUST00000135417 Rpl30-003 retained_intron Mus_musculus 3e-31 141
ENSMUST00000140527 Rpl30-004 processed_transcript Mus_musculus 5e-32 141
ENST00000287038 RPL30-001 protein_coding Homo_sapiens 0 285
ENST00000396070 RPL30-009 protein_coding Homo_sapiens 9e-30 134
ENST00000518164 RPL30-002 processed_transcript Homo_sapiens 3e-29 134
ENST00000518850 RPL30-010 nonsense_mediated_decay Homo_sapiens 4e-30 135
ENST00000520998 RPL30-006 retained_intron Homo_sapiens 5e-30 135
ENST00000521291 RPL30-007 protein_coding Homo_sapiens 0 285
ENST00000521726 RPL30-003 protein_coding Homo_sapiens 0 285

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