C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379107 PAX6-011 ENSG00000007372 9606 - 11:31789182-31810305 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainTestisENST00000379107
Transcript ID Brain Testis
ENST00000379107 3.777±0.00 0.556±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KI CIL_0008KI_0001 VISTA 11:31301275-31902571
CIL_0007UQ CIL_0007UQ_0001 VISTA 11:31363809-31965336
CIL_0008UP CIL_0008UP_0001 VISTA 11:31463875-32065678
CIL_0007XG CIL_0007XG_0001 VISTA 11:31494904-32096873
CIL_000914 CIL_000914_0001 VISTA 11:31574048-32177516
CIL_0007JA CIL_0007JA_0002 UCNEbase 11:31639896-31819124
CIL_0007PY CIL_0007PY_0001 VISTA 11:31667627-32268476
CIL_00096J CIL_00096J_0001 VISTA 11:31730852-32331950

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0000979 IDA RNA polymerase II core promoter sequence-specific DNA binding
GO:0000981 IDA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001568 IMP blood vessel development
GO:0001654 TAS eye development
GO:0003322 IMP pancreatic A cell development
GO:0003677 TAS:IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IMP transcription from RNA polymerase II promoter
GO:0007417 TAS central nervous system development
GO:0007601 TAS visual perception
GO:0008134 ISS transcription factor binding
GO:0009611 IEP response to wounding
GO:0009887 TAS organ morphogenesis
GO:0010628 IMP positive regulation of gene expression
GO:0016567 ISS protein ubiquitination
GO:0019901 ISS protein kinase binding
GO:0035035 ISS histone acetyltransferase binding
GO:0042593 IMP glucose homeostasis
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0048663 NAS neuron fate commitment
GO:0050768 ISS negative regulation of neurogenesis
GO:0061072 IMP iris morphogenesis
GO:0061303 IMP cornea development in camera-type eye
GO:0070412 IPI R-SMAD binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090391 Pax6-013 protein_coding Mus_musculus 0 2900
ENSMUST00000167211 Pax6-201 protein_coding Mus_musculus 0 2854
ENSMUST00000111085 Pax6-008 protein_coding Mus_musculus 0 2854
ENSMUST00000111086 Pax6-001 protein_coding Mus_musculus 0 2854
ENSMUST00000111082 Pax6-012 protein_coding Mus_musculus 0 2455
ENSMUST00000090397 Pax6-011 protein_coding Mus_musculus 0 2455
ENSMUST00000111087 Pax6-002 protein_coding Mus_musculus 0 2455
ENSMUST00000111083 Pax6-009 protein_coding Mus_musculus 0 2444
ENSMUST00000146803 Pax6-026 processed_transcript Mus_musculus 0 2128
ENSMUST00000154643 Pax6-014 retained_intron Mus_musculus 0 1365
ENSMUST00000140173 Pax6-019 processed_transcript Mus_musculus 0 1210
ENSMUST00000123063 Pax6-003 processed_transcript Mus_musculus 0 1116
ENSDART00000128877 pax6a-203 protein_coding Danio_rerio 0 1033
ENSDART00000148420 pax6a-001 protein_coding Danio_rerio 0 1033
ENSDART00000129319 pax6a-204 protein_coding Danio_rerio 0 1020
ENSDART00000131523 pax6a-005 protein_coding Danio_rerio 0 1020
ENSMUST00000135412 Pax6-020 processed_transcript Mus_musculus 0 972
ENSMUST00000153011 Pax6-018 processed_transcript Mus_musculus 0 898
ENSMUST00000111088 Pax6-004 protein_coding Mus_musculus 0 869
ENSDART00000066224 pax6a-201 protein_coding Danio_rerio 0 861
ENSDART00000124577 pax6a-202 protein_coding Danio_rerio 0 861
ENSDART00000066225 pax6a-002 protein_coding Danio_rerio 0 861
ENSDART00000145946 pax6b-001 protein_coding Danio_rerio 0 826
ENSMUST00000155081 Pax6-023 processed_transcript Mus_musculus 0 808
ENSMUST00000156216 Pax6-017 protein_coding Mus_musculus 0 760
ENSDART00000133390 pax6a-009 protein_coding Danio_rerio 0 660
ENSMUST00000138365 Pax6-021 processed_transcript Mus_musculus 0 628
ENSMUST00000145744 Pax6-022 processed_transcript Mus_musculus 0 604
ENSDART00000132425 pax6a-006 protein_coding Danio_rerio 0 580
ENSDART00000139544 pax6a-008 protein_coding Danio_rerio 0 503
ENSDART00000014572 pax6b-201 protein_coding Danio_rerio 0 459
ENSMUST00000147946 Pax6-027 retained_intron Mus_musculus 0 348
ENSMUST00000123000 Pax6-025 retained_intron Mus_musculus 0 231
ENSMUST00000154302 Pax6-024 retained_intron Mus_musculus 0 231
ENSMUST00000142772 Pax6-015 protein_coding Mus_musculus 9.99967e-42 176

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