C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage gated, type XII, alpha a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000083256 scn12aa-201 ENSDARG00000059692 7955 + 2:51470415-51506531 protein_coding

Danio rerio EnsemblZv9

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyENSDART00000083256
Transcript ID Brain Kidney
ENSDART00000083256 0.214±0.06 0.069±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001518 IEA voltage-gated sodium channel complex
GO:0001947 IMP heart looping
GO:0003007 IMP heart morphogenesis
GO:0005216 IEA ion channel activity
GO:0005244 IEA voltage-gated ion channel activity
GO:0005248 IEA voltage-gated sodium channel activity
GO:0005272 IEA sodium channel activity
GO:0005515 IEA protein binding
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0006814 IEA sodium ion transport
GO:0008016 IMP regulation of heart contraction
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028377 Scn2a1-001 protein_coding Mus_musculus 0 811
ENSMUST00000077489 Scn1a-004 protein_coding Mus_musculus 0 614
ENSMUST00000094951 Scn1a-005 protein_coding Mus_musculus 0 614
ENSMUST00000100063 Scn9a-201 protein_coding Mus_musculus 0 760
ENSMUST00000100064 Scn9a-001 protein_coding Mus_musculus 0 760
ENSMUST00000100067 Scn2a1-201 protein_coding Mus_musculus 0 811
ENSMUST00000112354 Scn9a-002 protein_coding Mus_musculus 0 760
ENSMUST00000112366 Scn1a-001 protein_coding Mus_musculus 0 614
ENSMUST00000112371 Scn1a-201 protein_coding Mus_musculus 0 614
ENSMUST00000156865 Scn1a-003 processed_transcript Mus_musculus 0 375
ENSMUST00000164384 Scn9a-202 protein_coding Mus_musculus 0 760
ENSMUST00000169900 Scn9a-203 protein_coding Mus_musculus 0 760
ENST00000283254 SCN3A-001 protein_coding Homo_sapiens 0 647
ENST00000360093 SCN3A-201 protein_coding Homo_sapiens 0 647
ENST00000409101 SCN3A-002 protein_coding Homo_sapiens 0 647
ENST00000435607 SCN4A-201 protein_coding Homo_sapiens 0 889
ENST00000578147 SCN4A-001 protein_coding Homo_sapiens 0 889

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