C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type I, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156865 Scn1a-003 ENSMUSG00000064329 10090 - 2:66272892-66318139 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLungOvaryTestisENSMUST00000156865
Transcript ID Adipose Brain Breast Colon Kidney Lung Ovary Testis
ENSMUST00000156865 0.016±0.00 8.606±0.00 0.040±0.02 0.041±0.00 0.024±0.02 0.025±0.00 0.016±0.01 0.120±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087V CIL_00087V_0002 VISTA 2:65692128-66294633
CIL_0006CL CIL_0006CL_0002 CGP 2:66184327-66440840
CIL_0006CK CIL_0006CK_0002 CGP 2:66270781-66634962

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000106534 scn4aa-001 protein_coding Danio_rerio 0 484
ENSDART00000083256 scn12aa-201 protein_coding Danio_rerio 0 375
ENSDART00000097722 SCN11A-201 protein_coding Danio_rerio 0 250
ENST00000283254 SCN3A-001 protein_coding Homo_sapiens 0 1044
ENST00000283256 SCN2A-001 protein_coding Homo_sapiens 0 1138
ENST00000302328 SCN11A-001 protein_coding Homo_sapiens 0 230
ENST00000303354 SCN9A-201 protein_coding Homo_sapiens 0 935
ENST00000303395 SCN1A-001 protein_coding Homo_sapiens 0 1940
ENST00000333535 SCN5A-014 protein_coding Homo_sapiens 0 483
ENST00000354534 SCN8A-001 protein_coding Homo_sapiens 0 745
ENST00000360093 SCN3A-201 protein_coding Homo_sapiens 0 1044
ENST00000375405 SCN1A-002 protein_coding Homo_sapiens 0 1940
ENST00000375427 SCN2A-002 protein_coding Homo_sapiens 0 1138
ENST00000375437 SCN2A-201 protein_coding Homo_sapiens 0 1138
ENST00000409050 SCN1A-003 protein_coding Homo_sapiens 0 1940
ENST00000409101 SCN3A-002 protein_coding Homo_sapiens 0 1044
ENST00000409435 SCN9A-004 protein_coding Homo_sapiens 0 935
ENST00000409672 SCN9A-001 protein_coding Homo_sapiens 0 935
ENST00000413689 SCN5A-001 protein_coding Homo_sapiens 0 483
ENST00000414099 SCN5A-004 protein_coding Homo_sapiens 0 483
ENST00000423058 SCN1A-201 protein_coding Homo_sapiens 0 1940
ENST00000423572 SCN5A-003 protein_coding Homo_sapiens 0 483
ENST00000425664 SCN5A-201 protein_coding Homo_sapiens 0 483
ENST00000440431 SCN3A-004 protein_coding Homo_sapiens 0 761
ENST00000443581 SCN5A-202 protein_coding Homo_sapiens 0 483
ENST00000444237 SCN11A-002 protein_coding Homo_sapiens 0 230
ENST00000449557 SCN5A-010 protein_coding Homo_sapiens 0 483
ENST00000450102 SCN5A-008 protein_coding Homo_sapiens 0 483
ENST00000451551 SCN5A-203 protein_coding Homo_sapiens 0 483
ENST00000455624 SCN5A-002 protein_coding Homo_sapiens 0 483
ENST00000456224 SCN11A-003 protein_coding Homo_sapiens 0 230
ENST00000473295 SCN1A-005 retained_intron Homo_sapiens 0 348
ENST00000480032 SCN2A-005 retained_intron Homo_sapiens 0 477
ENST00000484898 SCN3A-008 processed_transcript Homo_sapiens 0 189
ENST00000491429 SCN1A-004 retained_intron Homo_sapiens 0 566
ENST00000599343 SCN8A-202 protein_coding Homo_sapiens 0 745

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