C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type I, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000094951 Scn1a-005 ENSMUSG00000064329 10090 - 2:66272884-66351177 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartLiverMuscleOvaryTestisENSMUST00000094951
Transcript ID Adipose Adrenal Breast Heart Liver Muscle Ovary Testis
ENSMUST00000094951 0.016±0.00 0.042±0.03 0.014±0.00 0.022±0.01 0.007±0.01 0.014±0.00 0.079±0.05 0.055±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087V CIL_00087V_0002 VISTA 2:65692128-66294633
CIL_0006CL CIL_0006CL_0002 CGP 2:66184327-66440840
CIL_0006CK CIL_0006CK_0002 CGP 2:66270781-66634962

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001508 IMP action potential
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005248 IMP voltage-gated sodium channel activity
GO:0006814 IMP sodium ion transport
GO:0007628 IMP adult walking behavior
GO:0014704 IDA intercalated disc
GO:0016020 IDA membrane
GO:0019227 IMP neuronal action potential propagation
GO:0019228 IMP neuronal action potential
GO:0030315 IDA T-tubule
GO:0030424 IDA axon
GO:0033268 IDA node of Ranvier
GO:0034706 IPI sodium channel complex
GO:0034765 IEA regulation of ion transmembrane transport
GO:0035725 IEA sodium ion transmembrane transport
GO:0042391 IMP regulation of membrane potential
GO:0043025 IDA neuronal cell body
GO:0043194 IDA axon initial segment
GO:0050884 IMP neuromuscular process controlling posture
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000090994 scn1lab-201 protein_coding Danio_rerio 0 1247
ENSDART00000151247 scn1lab-001 protein_coding Danio_rerio 0 1247
ENSDART00000106534 scn4aa-001 protein_coding Danio_rerio 0 784
ENSDART00000097722 SCN11A-201 protein_coding Danio_rerio 0 641
ENSDART00000083256 scn12aa-201 protein_coding Danio_rerio 0 614
ENSDART00000022761 scn8ab-201 protein_coding Danio_rerio 0 569
ENSDART00000151299 scn8ab-001 protein_coding Danio_rerio 0 569
ENSDART00000011718 scn1a-201 protein_coding Danio_rerio 0 381
ENSDART00000090979 scn1a-202 protein_coding Danio_rerio 0 381
ENST00000283254 SCN3A-001 protein_coding Homo_sapiens 0 3083
ENST00000283256 SCN2A-001 protein_coding Homo_sapiens 0 3496
ENST00000302328 SCN11A-001 protein_coding Homo_sapiens 0 254
ENST00000303354 SCN9A-201 protein_coding Homo_sapiens 0 1744
ENST00000303395 SCN1A-001 protein_coding Homo_sapiens 0 5171
ENST00000333535 SCN5A-014 protein_coding Homo_sapiens 0 737
ENST00000354534 SCN8A-001 protein_coding Homo_sapiens 0 1483
ENST00000360093 SCN3A-201 protein_coding Homo_sapiens 0 3083
ENST00000375405 SCN1A-002 protein_coding Homo_sapiens 0 5173
ENST00000375427 SCN2A-002 protein_coding Homo_sapiens 0 3496
ENST00000375437 SCN2A-201 protein_coding Homo_sapiens 0 3496
ENST00000409050 SCN1A-003 protein_coding Homo_sapiens 0 7819
ENST00000409101 SCN3A-002 protein_coding Homo_sapiens 0 3081
ENST00000409435 SCN9A-004 protein_coding Homo_sapiens 0 1744
ENST00000409672 SCN9A-001 protein_coding Homo_sapiens 0 1744
ENST00000413689 SCN5A-001 protein_coding Homo_sapiens 0 737
ENST00000414099 SCN5A-004 protein_coding Homo_sapiens 0 706
ENST00000423058 SCN1A-201 protein_coding Homo_sapiens 0 5171
ENST00000423572 SCN5A-003 protein_coding Homo_sapiens 0 737
ENST00000424833 SCN2A-003 protein_coding Homo_sapiens 0 1271
ENST00000425664 SCN5A-201 protein_coding Homo_sapiens 0 706
ENST00000435607 SCN4A-201 protein_coding Homo_sapiens 0 558
ENST00000440431 SCN3A-004 protein_coding Homo_sapiens 0 1519
ENST00000443581 SCN5A-202 protein_coding Homo_sapiens 0 737
ENST00000444237 SCN11A-002 protein_coding Homo_sapiens 0 254
ENST00000449557 SCN5A-010 protein_coding Homo_sapiens 0 737
ENST00000450102 SCN5A-008 protein_coding Homo_sapiens 0 737
ENST00000451551 SCN5A-203 protein_coding Homo_sapiens 0 737
ENST00000452182 SCN9A-003 protein_coding Homo_sapiens 0 455
ENST00000453007 SCN3A-003 protein_coding Homo_sapiens 0 599
ENST00000454569 SCN9A-002 protein_coding Homo_sapiens 0 455
ENST00000455624 SCN5A-002 protein_coding Homo_sapiens 0 483
ENST00000456224 SCN11A-003 protein_coding Homo_sapiens 0 254
ENST00000465043 SCN3A-007 processed_transcript Homo_sapiens 0 265
ENST00000473295 SCN1A-005 retained_intron Homo_sapiens 0 348
ENST00000480032 SCN2A-005 retained_intron Homo_sapiens 0 1543
ENST00000484898 SCN3A-008 processed_transcript Homo_sapiens 0 189
ENST00000486878 SCN2A-004 retained_intron Homo_sapiens 0 427
ENST00000491429 SCN1A-004 retained_intron Homo_sapiens 0 566
ENST00000507401 SCN1A-007 retained_intron Homo_sapiens 0 414
ENST00000550891 SCN8A-003 protein_coding Homo_sapiens 0 505
ENST00000551216 SCN8A-004 protein_coding Homo_sapiens 0 348
ENST00000578147 SCN4A-001 protein_coding Homo_sapiens 0 558
ENST00000599343 SCN8A-202 protein_coding Homo_sapiens 0 1483

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