C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000174008 Smarca4-003 ENSMUSG00000032187 10090 + 9:21616264-21703366 protein_coding

Mus musculus EnsemblGRCm38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000174008
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000174008 15.566±3.39 22.713±4.83 17.562±0.79 48.783±9.98 15.466±5.60 18.055±2.16 7.861±0.38 9.981±0.57 9.737±3.93 16.635±2.56 6.359±0.66 30.456±6.35 24.491±11.92 18.869±1.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002S7 CIL_0002S7_0002 CGP 9:21592722-21704230
CIL_00058P CIL_00058P_0004 CGP 9:21616169-21749916

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000792 IDA heterochromatin
GO:0000902 IMP cell morphogenesis
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001570 IMP vasculogenesis
GO:0001701 IMP in utero embryonic development
GO:0001832 IMP blastocyst growth
GO:0001835 IMP blastocyst hatching
GO:0001889 IMP liver development
GO:0003682 IDA chromatin binding
GO:0003714 ISS transcription corepressor activity
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005719 IDA nuclear euchromatin
GO:0005726 IDA perichromatin fibrils
GO:0006334 TAS nucleosome assembly
GO:0006338 IMP chromatin remodeling
GO:0006346 IDA methylation-dependent chromatin silencing
GO:0006351 IEA transcription, DNA-templated
GO:0007399 IMP nervous system development
GO:0007403 IMP glial cell fate determination
GO:0007507 IMP heart development
GO:0008134 IPI transcription factor binding
GO:0010424 IMP DNA methylation on cytosine within a CG sequence
GO:0016514 TAS SWI/SNF complex
GO:0016887 TAS ATPase activity
GO:0019827 IMP stem cell maintenance
GO:0022008 IDA neurogenesis
GO:0030198 IMP extracellular matrix organization
GO:0030216 IMP keratinocyte differentiation
GO:0030900 IMP forebrain development
GO:0030902 IMP hindbrain development
GO:0035116 IMP embryonic hindlimb morphogenesis
GO:0035887 IMP aortic smooth muscle cell differentiation
GO:0043388 IGI positive regulation of DNA binding
GO:0043966 IMP histone H3 acetylation
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0048562 IMP embryonic organ morphogenesis
GO:0048730 IMP epidermis morphogenesis
GO:0060318 IMP definitive erythrocyte differentiation
GO:0060347 IGI heart trabecula formation
GO:0070307 IMP lens fiber cell development
GO:0071564 IDA npBAF complex
GO:0071565 IDA nBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000115110 smarca4-201 protein_coding Danio_rerio 0 3073
ENSDART00000134514 smarca4-001 protein_coding Danio_rerio 0 3073
ENSDART00000041412 smarca2-001 protein_coding Danio_rerio 0 1670
ENSDART00000003698 SMARCA4 (1 of 2)-201 protein_coding Danio_rerio 0 1428
ENST00000344626 SMARCA4-001 protein_coding Homo_sapiens 0 4785
ENST00000413806 SMARCA4-201 protein_coding Homo_sapiens 0 4198
ENST00000429416 SMARCA4-007 protein_coding Homo_sapiens 0 4695
ENST00000444061 SMARCA4-003 protein_coding Homo_sapiens 0 6107
ENST00000450717 SMARCA4-202 protein_coding Homo_sapiens 0 4671
ENST00000538456 SMARCA4-006 processed_transcript Homo_sapiens 0 516
ENST00000541122 SMARCA4-005 protein_coding Homo_sapiens 0 6035
ENST00000585799 SMARCA4-011 retained_intron Homo_sapiens 0 2867
ENST00000586892 SMARCA4-013 retained_intron Homo_sapiens 0 302
ENST00000589677 SMARCA4-004 protein_coding Homo_sapiens 0 6054
ENST00000590574 SMARCA4-002 protein_coding Homo_sapiens 0 6080
ENST00000591545 SMARCA4-009 retained_intron Homo_sapiens 0 4241
ENST00000591595 SMARCA4-010 retained_intron Homo_sapiens 0 3020
ENST00000592158 SMARCA4-018 protein_coding Homo_sapiens 0 374
ENST00000592604 SMARCA4-008 retained_intron Homo_sapiens 0 3291

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