C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000344626 SMARCA4-001 ENSG00000127616 9606 + 19:10961001-11062059 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000344626
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000344626 10.862±0.00 6.423±0.00 1.791±0.00 6.590±5.69 2.203±1.19 4.419±0.00 3.884±0.00 0.575±0.00 3.653±0.00 8.669±0.00 13.375±9.53 10.673±7.74 20.880±5.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002S7 CIL_0002S7_0001 CGP 19:10928733-11065395
CIL_00058P CIL_00058P_0003 CGP 19:10961001-11133816

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 TAS negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001105 IDA RNA polymerase II transcription coactivator activity
GO:0002039 IPI p53 binding
GO:0003407 IEP neural retina development
GO:0003677 IEA DNA binding
GO:0003713 IMP transcription coactivator activity
GO:0003714 IDA transcription corepressor activity
GO:0004386 IEA helicase activity
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005615 IDA extracellular space
GO:0005634 IDA:IEA nucleus
GO:0005730 IDA nucleolus
GO:0006200 IGI ATP catabolic process
GO:0006337 IDA nucleosome disassembly
GO:0006338 IDA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 NAS regulation of transcription from RNA polymerase II promoter
GO:0007070 TAS negative regulation of transcription from RNA polymerase II promoter during mitosis
GO:0008094 IGI DNA-dependent ATPase activity
GO:0016020 IDA membrane
GO:0016514 IDA SWI/SNF complex
GO:0016817 IEA hydrolase activity, acting on acid anhydrides
GO:0016818 IEA hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0030308 IMP negative regulation of cell growth
GO:0030957 IPI Tat protein binding
GO:0031492 IDA nucleosomal DNA binding
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0043234 IDA protein complex
GO:0043923 IMP positive regulation by host of viral transcription
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0047485 IPI protein N-terminus binding
GO:0050681 IPI androgen receptor binding
GO:0051091 IDA positive regulation of sequence-specific DNA binding transcription factor activity
GO:0060766 IMP negative regulation of androgen receptor signaling pathway
GO:0070577 IDA lysine-acetylated histone binding
GO:0071564 ISS npBAF complex
GO:0071565 ISS nBAF complex
GO:2000134 TAS negative regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172996 Smarca4-002 protein_coding Mus_musculus 0 4822
ENSMUST00000098948 Smarca4-201 protein_coding Mus_musculus 0 4813
ENSMUST00000034707 Smarca4-001 protein_coding Mus_musculus 0 4813
ENSMUST00000174008 Smarca4-003 protein_coding Mus_musculus 0 4785
ENSDART00000115110 smarca4-201 protein_coding Danio_rerio 0 2427
ENSDART00000134514 smarca4-001 protein_coding Danio_rerio 0 2427
ENSMUST00000099537 Smarca2-002 nonsense_mediated_decay Mus_musculus 0 1668
ENSMUST00000176030 Smarca2-003 protein_coding Mus_musculus 0 1668
ENSMUST00000025862 Smarca2-001 protein_coding Mus_musculus 0 1668
ENSDART00000041412 smarca2-001 protein_coding Danio_rerio 0 1467
ENSDART00000003698 SMARCA4 (1 of 2)-201 protein_coding Danio_rerio 0 1297
ENSMUST00000175935 Smarca2-004 processed_transcript Mus_musculus 0 857
ENSMUST00000176769 Smarca2-005 protein_coding Mus_musculus 0 625

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