C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000413806 SMARCA4-201 ENSG00000127616 9606 + 19:10984152-11062282 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002S7 CIL_0002S7_0001 CGP 19:10928733-11065395
CIL_00058P CIL_00058P_0003 CGP 19:10961001-11133816

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016817 IEA hydrolase activity, acting on acid anhydrides
GO:0016818 IEA hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000098948 Smarca4-201 protein_coding Mus_musculus 0 4276
ENSMUST00000034707 Smarca4-001 protein_coding Mus_musculus 0 4218
ENSMUST00000174008 Smarca4-003 protein_coding Mus_musculus 0 4198
ENSMUST00000172996 Smarca4-002 protein_coding Mus_musculus 0 2748
ENSDART00000115110 smarca4-201 protein_coding Danio_rerio 0 2364
ENSDART00000134514 smarca4-001 protein_coding Danio_rerio 0 2364
ENSDART00000003698 SMARCA4 (1 of 2)-201 protein_coding Danio_rerio 0 1646
ENSMUST00000099537 Smarca2-002 nonsense_mediated_decay Mus_musculus 0 1461
ENSMUST00000176030 Smarca2-003 protein_coding Mus_musculus 0 1461
ENSMUST00000025862 Smarca2-001 protein_coding Mus_musculus 0 1461
ENSDART00000041412 smarca2-001 protein_coding Danio_rerio 0 1399
ENSMUST00000175935 Smarca2-004 processed_transcript Mus_musculus 0 1081
ENSMUST00000176769 Smarca2-005 protein_coding Mus_musculus 0 848

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