C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000592158 SMARCA4-018 ENSG00000127616 9606 + 19:11030813-11041466 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002S7 CIL_0002S7_0001 CGP 19:10928733-11065395
CIL_00058P CIL_00058P_0003 CGP 19:10961001-11133816

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0042393 IEA histone binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000098948 Smarca4-201 protein_coding Mus_musculus 0 433
ENSMUST00000172996 Smarca4-002 protein_coding Mus_musculus 0 433
ENSMUST00000174008 Smarca4-003 protein_coding Mus_musculus 0 374
ENSMUST00000034707 Smarca4-001 protein_coding Mus_musculus 0 374
ENSDART00000003698 SMARCA4 (1 of 2)-201 protein_coding Danio_rerio 0 198
ENSDART00000115110 smarca4-201 protein_coding Danio_rerio 5e-37 158
ENSDART00000134514 smarca4-001 protein_coding Danio_rerio 5e-37 158
ENSMUST00000175935 Smarca2-004 processed_transcript Mus_musculus 7e-26 121
ENSMUST00000176769 Smarca2-005 protein_coding Mus_musculus 7e-26 121
ENSMUST00000099537 Smarca2-002 nonsense_mediated_decay Mus_musculus 7e-26 121
ENSMUST00000176030 Smarca2-003 protein_coding Mus_musculus 7e-26 121
ENSMUST00000025862 Smarca2-001 protein_coding Mus_musculus 7e-26 121

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